Analysis of interatomic Contacts of Structural Units in PDB entry:
4RM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RM0 entry

There are 2 chains in PDB entry 4RM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 221MET 527
B
 THR 222MET 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4RM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
231 235Right-handed 310
Helix 2
2
A
277 281Right-handed 310
Helix 3
3
A
361 364Right-handed 310
Helix 4
4
A
451 462Right-handed alpha
Helix 5
5
B
231 235Right-handed 310
Helix 6
6
B
277 281Right-handed 310
Helix 7
7
B
361 364Right-handed 310
Helix 8
8
B
451 462Right-handed alpha
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There are 6 sheets in PDB entry 4RM0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
426 435anti-parallel
Strand 3
A
246 250anti-parallel
Strand 4
A
502 504anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
426 435anti-parallel
Strand 3
A
493 497anti-parallel
Strand 4
A
482 489anti-parallel
Strand 5
A
469 475anti-parallel
Strand 6
A
511 518anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
381 390parallel
Strand 3
A
329 335anti-parallel
Strand 4
A
349 354anti-parallel
Strand 5
A
366 373anti-parallel
Strand 6
A
299 304anti-parallel
Strand 7
A
284 288anti-parallel
Strand 8
A
381 390anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 448first strand
Strand 2
B
426 435anti-parallel
Strand 3
B
246 250anti-parallel
Strand 4
B
502 504anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 448first strand
Strand 2
B
426 435anti-parallel
Strand 3
B
493 497anti-parallel
Strand 4
B
482 489anti-parallel
Strand 5
B
469 475anti-parallel
Strand 6
B
511 518anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 439first strand
Strand 2
B
381 390parallel
Strand 3
B
329 335anti-parallel
Strand 4
B
349 354anti-parallel
Strand 5
B
366 373anti-parallel
Strand 6
B
299 304anti-parallel
Strand 7
B
284 288anti-parallel
Strand 8
B
381 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il