Analysis of interatomic Contacts of Structural Units in PDB entry:
4RMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RMB entry

There are 2 chains in PDB entry 4RMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 494SER 642
B
 ARG 493HIS 650
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4RMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
547 549Right-handed 310
Helix 2
2
A
565 570Right-handed alpha
Helix 3
3
B
545 549Right-handed 310
Helix 4
4
B
565 570Right-handed alpha
Helix 5
5
B
633 638Right-handed 310
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There are 5 sheets in PDB entry 4RMB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
538 545anti-parallel
Strand 3
A
591 600anti-parallel
Strand 4
A
495 502anti-parallel
Strand 5
B
641 645anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 510first strand
Strand 2
A
586 587anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
577 581anti-parallel
Strand 3
A
519 523anti-parallel
Strand 4
A
604 611anti-parallel
Strand 5
A
618 629anti-parallel
Strand 6
B
618 627anti-parallel
Strand 7
B
604 611anti-parallel
Strand 8
B
519 524anti-parallel
Strand 9
B
577 581anti-parallel
Strand 10
B
572 573anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 641first strand
Strand 2
B
495 502anti-parallel
Strand 3
B
592 600anti-parallel
Strand 4
B
538 544anti-parallel
Strand 5
B
563 564anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
509 510first strand
Strand 2
B
586 587anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il