Analysis of interatomic Contacts of Structural Units in PDB entry:
4RMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RMF entry

There is 1 chain in PDB entry 4RMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLY 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4RMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 15Right-handed 310
Helix 3
3
A
52 60Right-handed alpha
Helix 4
4
A
116 123Right-handed alpha
Helix 5
5
A
123 128Right-handed alpha
Helix 6
6
A
130 154Right-handed alpha
Helix 7
7
A
193 203Right-handed alpha
Helix 8
8
A
239 257Right-handed alpha
Helix 9
9
A
271 279Right-handed alpha
Helix 10
10
A
303 307Right-handed 310
Helix 11
11
A
318 322Right-handed 310
Helix 12
12
A
323 336Right-handed alpha
Helix 13
13
A
357 361Right-handed 310
Helix 14
14
A
362 368Right-handed alpha
Helix 15
15
A
368 374Right-handed alpha
Helix 16
16
A
387 407Right-handed alpha
Helix 17
17
A
455 459Right-handed 310
Helix 18
18
A
465 469Right-handed 310
Helix 19
19
A
492 503Right-handed alpha
Helix 20
20
A
506 521Right-handed alpha
Helix 21
21
A
535 544Right-handed alpha
Helix 22
22
A
547 552Right-handed 310
Helix 23
23
A
572 577Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4RMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
91 102parallel
Strand 5
A
67 76anti-parallel
Strand 6
A
18 31anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
207 215parallel
Strand 3
A
227 236anti-parallel
Strand 4
A
528 534anti-parallel
Strand 5
A
481 488anti-parallel
Strand 6
A
473 478anti-parallel
Strand 7
A
416 420anti-parallel
Strand 8
A
268 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
380 385anti-parallel
Strand 4
A
343 347anti-parallel
Strand 5
A
353 354anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
444 446anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il