Analysis of interatomic Contacts of Structural Units in PDB entry:
4RMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RMZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 4RMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 165GLN 341
A
 VAL 343MET 344
A
 ARG 347THR 458
B
 PHE 165MET 344
B
 ARG 347THR 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4RMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
169 177Right-handed alpha
Helix 2
2
A
184 188Right-handed 310
Helix 3
3
A
222 240Right-handed alpha
Helix 4
4
A
269 276Right-handed alpha
Helix 5
5
A
277 280Right-handed 310
Helix 6
6
A
284 305Right-handed alpha
Helix 7
7
A
313 315Right-handed 310
Helix 8
8
A
351 355Right-handed 310
Helix 9
9
A
356 361Right-handed alpha
Helix 10
10
A
365 383Right-handed alpha
Helix 11
11
A
395 405Right-handed alpha
Helix 12
12
A
409 413Right-handed 310
Helix 13
13
A
422 437Right-handed alpha
Helix 14
14
A
440 444Right-handed 310
Helix 15
15
A
446 457Right-handed alpha
Helix 16
16
B
169 177Right-handed alpha
Helix 17
17
B
222 240Right-handed alpha
Helix 18
18
B
269 276Right-handed alpha
Helix 19
19
B
277 280Right-handed 310
Helix 20
20
B
284 305Right-handed alpha
Helix 21
21
B
313 315Right-handed 310
Helix 22
22
B
351 355Right-handed 310
Helix 23
23
B
356 361Right-handed alpha
Helix 24
24
B
366 383Right-handed alpha
Helix 25
25
B
397 405Right-handed alpha
Helix 26
26
B
409 413Right-handed 310
Helix 27
27
B
422 437Right-handed alpha
Helix 28
28
B
440 444Right-handed 310
Helix 29
29
B
446 458Right-handed alpha
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There are 7 sheets in PDB entry 4RMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
198 205anti-parallel
Strand 6
A
191 194anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
198 205anti-parallel
Strand 6
B
191 194anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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