Analysis of interatomic Contacts of Structural Units in PDB entry:
4RNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RNF entry

There is 1 chain in PDB entry 4RNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4RNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 30Right-handed alpha
Helix 2
2
A
52 69Right-handed alpha
Helix 3
3
A
94 113Right-handed alpha
Helix 4
4
A
141 160Right-handed alpha
Helix 5
5
A
168 192Right-handed alpha
Helix 6
6
A
227 238Right-handed alpha
Helix 7
7
A
240 261Right-handed alpha
Helix 8
8
A
274 279Right-handed alpha
Helix 9
9
A
282 295Right-handed alpha
Helix 10
10
A
297 299Right-handed 310
Helix 11
11
A
306 311Right-handed alpha
Helix 12
12
A
313 326Right-handed alpha
Helix 13
13
A
357 362Right-handed alpha
Helix 14
14
A
367 384Right-handed alpha
Helix 15
15
A
395 405Right-handed alpha
Helix 16
16
A
412 416Right-handed 310
Helix 17
17
A
420 428Right-handed alpha
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There are 3 sheets in PDB entry 4RNF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
33 42anti-parallel
Strand 4
A
127 135anti-parallel
Strand 5
A
163 166parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
123 124anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
209 220anti-parallel
Strand 3
A
269 272parallel
Strand 4
A
301 305parallel
Strand 5
A
330 333parallel
Strand 6
A
353 356parallel
Strand 7
A
387 390parallel
Strand 8
A
409 410parallel
Strand 9
A
194 203anti-parallel
Strand 10
A
209 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il