Analysis of interatomic Contacts of Structural Units in PDB entry:
4RNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RNW entry

There are 2 chains in PDB entry 4RNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ARG 390
B
 GLY 6ARG 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4RNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 16Right-handed alpha
Helix 2
2
A
29 37Right-handed alpha
Helix 3
3
A
47 53Right-handed alpha
Helix 4
4
A
55 63Right-handed alpha
Helix 5
5
A
70 74Right-handed 310
Helix 6
6
A
87 94Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
151 160Right-handed alpha
Helix 9
9
A
189 206Right-handed alpha
Helix 10
10
A
217 221Right-handed 310
Helix 11
11
A
222 229Right-handed alpha
Helix 12
12
A
243 253Right-handed alpha
Helix 13
13
A
261 282Right-handed alpha
Helix 14
14
A
295 302Right-handed alpha
Helix 15
15
A
315 320Right-handed alpha
Helix 16
16
A
320 335Right-handed alpha
Helix 17
17
A
348 352Right-handed 310
Helix 18
18
A
353 357Right-handed 310
Helix 19
19
A
359 377Right-handed alpha
Helix 20
20
B
10 16Right-handed alpha
Helix 21
21
B
29 37Right-handed alpha
Helix 22
22
B
47 53Right-handed alpha
Helix 23
23
B
55 63Right-handed alpha
Helix 24
24
B
70 74Right-handed 310
Helix 25
25
B
87 94Right-handed alpha
Helix 26
26
B
113 117Right-handed 310
Helix 27
27
B
151 160Right-handed alpha
Helix 28
28
B
189 206Right-handed alpha
Helix 29
29
B
217 221Right-handed 310
Helix 30
30
B
222 229Right-handed alpha
Helix 31
31
B
243 253Right-handed alpha
Helix 32
32
B
261 282Right-handed alpha
Helix 33
33
B
295 302Right-handed alpha
Helix 34
34
B
315 320Right-handed alpha
Helix 35
35
B
320 335Right-handed alpha
Helix 36
36
B
348 352Right-handed 310
Helix 37
37
B
353 357Right-handed 310
Helix 38
38
B
359 377Right-handed alpha
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There are 8 sheets in PDB entry 4RNW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
42 45parallel
Strand 3
A
20 23parallel
Strand 4
A
383 387parallel
Strand 5
A
339 343parallel
Strand 6
A
286 290parallel
Strand 7
A
209 215parallel
Strand 8
A
166 168parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
42 45parallel
Strand 3
A
20 23parallel
Strand 4
A
383 387parallel
Strand 5
A
339 343parallel
Strand 6
A
286 290parallel
Strand 7
A
209 215parallel
Strand 8
A
172 173parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
124 126anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
257 259parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
42 45parallel
Strand 3
B
20 23parallel
Strand 4
B
383 387parallel
Strand 5
B
339 343parallel
Strand 6
B
286 290parallel
Strand 7
B
209 215parallel
Strand 8
B
166 168parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
42 45parallel
Strand 3
B
20 23parallel
Strand 4
B
383 387parallel
Strand 5
B
339 343parallel
Strand 6
B
286 290parallel
Strand 7
B
209 215parallel
Strand 8
B
172 173parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
124 126anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
257 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il