Analysis of interatomic Contacts of Structural Units in PDB entry:
4ROX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ROX entry

There are 2 chains in PDB entry 4ROX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 221MET 525
B
 GLY 221MET 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 4ROX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
233 237Right-handed 310
Helix 2
2
A
279 283Right-handed 310
Helix 3
3
A
360 363Right-handed 310
Helix 4
4
A
449 460Right-handed alpha
Helix 5
5
B
233 237Right-handed 310
Helix 6
6
B
279 283Right-handed 310
Helix 7
7
B
360 363Right-handed 310
Helix 8
8
B
449 460Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4ROX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
424 432anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
500 502anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
424 432anti-parallel
Strand 3
A
491 495anti-parallel
Strand 4
A
480 487anti-parallel
Strand 5
A
467 473anti-parallel
Strand 6
A
509 516anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 439first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
365 370anti-parallel
Strand 4
A
300 306anti-parallel
Strand 5
A
286 293anti-parallel
Strand 6
A
381 389anti-parallel
Strand 7
A
331 339anti-parallel
Strand 8
A
344 353anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
B
344 353anti-parallel
Strand 3
B
365 370anti-parallel
Strand 4
B
300 306anti-parallel
Strand 5
B
286 293anti-parallel
Strand 6
B
381 389anti-parallel
Strand 7
B
331 339anti-parallel
Strand 8
B
344 353anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 446first strand
Strand 2
B
424 432anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
500 502anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 446first strand
Strand 2
B
424 432anti-parallel
Strand 3
B
491 495anti-parallel
Strand 4
B
480 487anti-parallel
Strand 5
B
467 473anti-parallel
Strand 6
B
509 516anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il