Analysis of interatomic Contacts of Structural Units in PDB entry:
4RP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RP8 entry

There are 2 chains in PDB entry 4RP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15ALA 456
C
 VAL 15ALA 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4RP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 34Right-handed alpha
Helix 2
2
A
37 77Right-handed alpha
Helix 3
3
A
85 98Right-handed alpha
Helix 4
4
A
101 121Right-handed alpha
Helix 5
5
A
121 126Right-handed alpha
Helix 6
6
A
133 151Right-handed alpha
Helix 7
7
A
154 186Right-handed alpha
Helix 8
8
A
196 207Right-handed alpha
Helix 9
9
A
208 210Right-handed 310
Helix 10
10
A
212 216Right-handed 310
Helix 11
11
A
223 230Right-handed 310
Helix 12
12
A
231 252Right-handed alpha
Helix 13
13
A
252 261Right-handed alpha
Helix 14
14
A
264 305Right-handed alpha
Helix 15
15
A
314 321Right-handed 310
Helix 16
16
A
322 347Right-handed alpha
Helix 17
17
A
356 403Right-handed alpha
Helix 18
18
A
411 416Right-handed alpha
Helix 19
19
A
416 428Right-handed alpha
Helix 20
20
A
430 456Right-handed alpha
Helix 21
21
C
18 34Right-handed alpha
Helix 22
22
C
37 65Right-handed alpha
Helix 23
23
C
85 98Right-handed alpha
Helix 24
24
C
101 121Right-handed alpha
Helix 25
25
C
121 126Right-handed alpha
Helix 26
26
C
133 151Right-handed alpha
Helix 27
27
C
154 186Right-handed alpha
Helix 28
28
C
196 207Right-handed alpha
Helix 29
29
C
208 210Right-handed 310
Helix 30
30
C
212 220Right-handed 310
Helix 31
31
C
223 230Right-handed 310
Helix 32
32
C
231 250Right-handed alpha
Helix 33
33
C
252 261Right-handed alpha
Helix 34
34
C
264 305Right-handed alpha
Helix 35
35
C
314 321Right-handed 310
Helix 36
36
C
322 347Right-handed alpha
Helix 37
37
C
356 403Right-handed alpha
Helix 38
38
C
411 416Right-handed alpha
Helix 39
39
C
416 428Right-handed alpha
Helix 40
40
C
430 456Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4RP8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
82 84parallel
Strand 3
A
406 407parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
310 313parallel
Strand 3
A
191 192parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
352 355first strand
Strand 2
C
81 84parallel
Strand 3
C
406 407parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
310 313parallel
Strand 3
C
191 192parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il