Analysis of interatomic Contacts of Structural Units in PDB entry:
4RP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RP9 entry

There is 1 chain in PDB entry 4RP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6ALA 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4RP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
18 34Right-handed alpha
Helix 3
3
A
37 77Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
101 121Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
133 151Right-handed alpha
Helix 8
8
A
154 186Right-handed alpha
Helix 9
9
A
196 207Right-handed alpha
Helix 10
10
A
208 210Right-handed 310
Helix 11
11
A
212 216Right-handed 310
Helix 12
12
A
223 230Right-handed 310
Helix 13
13
A
231 250Right-handed alpha
Helix 14
14
A
252 261Right-handed alpha
Helix 15
15
A
264 305Right-handed alpha
Helix 16
16
A
314 321Right-handed 310
Helix 17
17
A
322 347Right-handed alpha
Helix 18
18
A
356 403Right-handed alpha
Helix 19
19
A
411 416Right-handed alpha
Helix 20
20
A
416 428Right-handed alpha
Helix 21
21
A
430 456Right-handed alpha
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There are 2 sheets in PDB entry 4RP9. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
82 84parallel
Strand 3
A
406 407parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
310 313parallel
Strand 3
A
191 192parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il