Analysis of interatomic Contacts of Structural Units in PDB entry:
4RPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RPC entry

There are 2 chains in PDB entry 4RPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ASN 258
B
 LYS 9ASN 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4RPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 35Right-handed alpha
Helix 2
2
A
35 43Right-handed alpha
Helix 3
3
A
66 81Right-handed alpha
Helix 4
4
A
93 106Right-handed alpha
Helix 5
5
A
123 125Right-handed 310
Helix 6
6
A
126 143Right-handed alpha
Helix 7
7
A
150 155Right-handed alpha
Helix 8
8
A
161 167Right-handed alpha
Helix 9
9
A
168 170Right-handed 310
Helix 10
10
A
175 189Right-handed alpha
Helix 11
11
A
191 195Right-handed 310
Helix 12
12
A
216 224Right-handed alpha
Helix 13
13
A
239 245Right-handed alpha
Helix 14
14
A
245 257Right-handed alpha
Helix 15
15
B
30 43Right-handed alpha
Helix 16
16
B
66 81Right-handed alpha
Helix 17
17
B
93 106Right-handed alpha
Helix 18
18
B
123 125Right-handed 310
Helix 19
19
B
126 143Right-handed alpha
Helix 20
20
B
150 155Right-handed alpha
Helix 21
21
B
161 167Right-handed alpha
Helix 22
22
B
168 170Right-handed 310
Helix 23
23
B
175 189Right-handed alpha
Helix 24
24
B
190 195Right-handed alpha
Helix 25
25
B
213 215Right-handed 310
Helix 26
26
B
216 224Right-handed alpha
Helix 27
27
B
239 245Right-handed alpha
Helix 28
28
B
245 257Right-handed alpha
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There are 3 sheets in PDB entry 4RPC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
20 24parallel
Strand 4
A
88 92parallel
Strand 5
A
112 116parallel
Strand 6
A
201 207parallel
Strand 7
A
229 233parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
109 110parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
20 24parallel
Strand 4
B
85 92parallel
Strand 5
B
109 116parallel
Strand 6
B
201 207parallel
Strand 7
B
229 233parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il