Analysis of interatomic Contacts of Structural Units in PDB entry:
4RPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RPF entry

There are 3 chains in PDB entry 4RPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 309
B
 SER 0GLY 309
C
 SER 0LEU 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4RPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 56Right-handed 310
Helix 2
2
A
59 62Right-handed 310
Helix 3
3
A
63 77Right-handed alpha
Helix 4
4
A
97 114Right-handed alpha
Helix 5
5
A
119 136Right-handed alpha
Helix 6
6
A
142 149Right-handed alpha
Helix 7
7
A
183 190Right-handed alpha
Helix 8
8
A
197 216Right-handed alpha
Helix 9
9
A
218 226Right-handed alpha
Helix 10
10
A
231 236Right-handed alpha
Helix 11
11
A
237 239Right-handed 310
Helix 12
12
A
241 253Right-handed alpha
Helix 13
13
A
272 287Right-handed alpha
Helix 14
14
B
52 56Right-handed 310
Helix 15
15
B
59 62Right-handed 310
Helix 16
16
B
63 77Right-handed alpha
Helix 17
17
B
97 114Right-handed alpha
Helix 18
18
B
119 136Right-handed alpha
Helix 19
19
B
142 149Right-handed alpha
Helix 20
20
B
183 190Right-handed alpha
Helix 21
21
B
197 216Right-handed alpha
Helix 22
22
B
218 226Right-handed alpha
Helix 23
23
B
231 236Right-handed alpha
Helix 24
24
B
237 239Right-handed 310
Helix 25
25
B
241 253Right-handed alpha
Helix 26
26
B
272 287Right-handed alpha
Helix 27
27
C
52 56Right-handed 310
Helix 28
28
C
59 62Right-handed 310
Helix 29
29
C
63 77Right-handed alpha
Helix 30
30
C
97 114Right-handed alpha
Helix 31
31
C
119 136Right-handed alpha
Helix 32
32
C
142 149Right-handed alpha
Helix 33
33
C
183 190Right-handed alpha
Helix 34
34
C
196 216Right-handed alpha
Helix 35
35
C
218 226Right-handed alpha
Helix 36
36
C
231 236Right-handed alpha
Helix 37
37
C
237 239Right-handed 310
Helix 38
38
C
241 253Right-handed alpha
Helix 39
39
C
272 287Right-handed alpha
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There are 9 sheets in PDB entry 4RPF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
82 87parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
1 11anti-parallel
Strand 5
A
20 26anti-parallel
Strand 6
A
294 300anti-parallel
Strand 7
A
172 177anti-parallel
Strand 8
A
266 270anti-parallel
Strand 9
A
256 259anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
151 157anti-parallel
Strand 3
A
20 26anti-parallel
Strand 4
A
1 11anti-parallel
Strand 5
A
306 307anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
B
194 196anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
82 87parallel
Strand 3
B
33 40anti-parallel
Strand 4
B
1 7anti-parallel
Strand 5
B
306 307anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
20 26anti-parallel
Strand 3
B
151 157anti-parallel
Strand 4
B
160 165anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
20 26anti-parallel
Strand 3
B
294 300anti-parallel
Strand 4
B
172 177anti-parallel
Strand 5
B
266 270anti-parallel
Strand 6
B
256 259anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
82 87parallel
Strand 3
C
33 40anti-parallel
Strand 4
C
1 7anti-parallel
Strand 5
C
306 307anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
20 26anti-parallel
Strand 3
C
151 154anti-parallel
Strand 4
C
162 165anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
20 26anti-parallel
Strand 3
C
294 300anti-parallel
Strand 4
C
172 177anti-parallel
Strand 5
C
266 270anti-parallel
Strand 6
C
256 259anti-parallel
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