Analysis of interatomic Contacts of Structural Units in PDB entry:
4RPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RPO entry

There are 4 chains in PDB entry 4RPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 89GLU 307
B
 ARG 89GLU 307
C
 PHE 90ALA 306
D
 ARG 89ALA 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4RPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 112Right-handed alpha
Helix 2
2
A
115 123Right-handed alpha
Helix 3
3
A
137 144Right-handed alpha
Helix 4
4
A
180 185Right-handed alpha
Helix 5
5
A
187 194Right-handed alpha
Helix 6
6
A
201 206Right-handed 310
Helix 7
7
A
207 219Right-handed alpha
Helix 8
8
A
220 222Right-handed 310
Helix 9
9
A
230 241Right-handed alpha
Helix 10
10
A
249 257Right-handed alpha
Helix 11
11
A
282 284Right-handed 310
Helix 12
12
A
286 298Right-handed alpha
Helix 13
13
B
104 123Right-handed alpha
Helix 14
14
B
137 144Right-handed alpha
Helix 15
15
B
179 183Right-handed 310
Helix 16
16
B
187 194Right-handed alpha
Helix 17
17
B
201 205Right-handed 310
Helix 18
18
B
206 207Right-handed 310
Helix 19
19
B
208 219Right-handed alpha
Helix 20
20
B
220 222Right-handed 310
Helix 21
21
B
230 241Right-handed alpha
Helix 22
22
B
249 257Right-handed alpha
Helix 23
23
B
282 284Right-handed 310
Helix 24
24
B
286 298Right-handed alpha
Helix 25
25
C
104 123Right-handed alpha
Helix 26
26
C
137 144Right-handed alpha
Helix 27
27
C
179 183Right-handed 310
Helix 28
28
C
187 194Right-handed alpha
Helix 29
29
C
201 206Right-handed 310
Helix 30
30
C
207 219Right-handed alpha
Helix 31
31
C
220 222Right-handed 310
Helix 32
32
C
230 241Right-handed alpha
Helix 33
33
C
249 259Right-handed alpha
Helix 34
34
C
282 284Right-handed 310
Helix 35
35
C
286 298Right-handed alpha
Helix 36
36
D
104 123Right-handed alpha
Helix 37
37
D
137 144Right-handed alpha
Helix 38
38
D
179 183Right-handed 310
Helix 39
39
D
187 194Right-handed alpha
Helix 40
40
D
201 205Right-handed 310
Helix 41
41
D
206 207Right-handed 310
Helix 42
42
D
208 219Right-handed alpha
Helix 43
43
D
220 222Right-handed 310
Helix 44
44
D
230 241Right-handed alpha
Helix 45
45
D
249 257Right-handed alpha
Helix 46
46
D
282 284Right-handed 310
Helix 47
47
D
286 299Right-handed alpha
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There are 5 sheets in PDB entry 4RPO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 169first strand
Strand 2
A
273 280anti-parallel
Strand 3
A
149 152anti-parallel
Strand 4
A
98 102parallel
Strand 5
A
127 131parallel
Strand 6
B
224 228parallel
Strand 7
B
195 199parallel
Strand 8
B
243 248parallel
Strand 9
B
171 176anti-parallel
Strand 10
B
261 264anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
171 176anti-parallel
Strand 3
A
243 248anti-parallel
Strand 4
A
195 199parallel
Strand 5
A
224 228parallel
Strand 6
B
127 131parallel
Strand 7
B
98 102parallel
Strand 8
B
149 152parallel
Strand 9
B
273 280anti-parallel
Strand 10
B
161 169anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 169first strand
Strand 2
C
273 280anti-parallel
Strand 3
C
149 152anti-parallel
Strand 4
C
98 102parallel
Strand 5
C
127 131parallel
Strand 6
D
224 228parallel
Strand 7
D
195 199parallel
Strand 8
D
243 248parallel
Strand 9
D
171 176anti-parallel
Strand 10
D
261 264anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 248first strand
Strand 2
C
171 176anti-parallel
Strand 3
C
261 264anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 199first strand
Strand 2
C
224 228parallel
Strand 3
D
127 131parallel
Strand 4
D
98 102parallel
Strand 5
D
149 152parallel
Strand 6
D
273 280anti-parallel
Strand 7
D
161 169anti-parallel
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