Analysis of interatomic Contacts of Structural Units in PDB entry:
4RPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RPT entry

There are 2 chains in PDB entry 4RPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 692GLU 835
B
 ASP 696GLU 835
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4RPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
727 729Right-handed 310
Helix 2
2
A
730 741Right-handed alpha
Helix 3
3
A
741 747Right-handed alpha
Helix 4
4
A
770 784Right-handed alpha
Helix 5
5
B
727 729Right-handed 310
Helix 6
6
B
730 741Right-handed alpha
Helix 7
7
B
741 747Right-handed alpha
Helix 8
8
B
770 784Right-handed alpha
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There are 4 sheets in PDB entry 4RPT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 788first strand
Strand 2
A
719 725anti-parallel
Strand 3
A
797 801anti-parallel
Strand 4
A
762 765anti-parallel
Strand 5
A
751 759anti-parallel
Strand 6
A
809 814anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 788first strand
Strand 2
A
719 725anti-parallel
Strand 3
A
699 705anti-parallel
Strand 4
A
817 824anti-parallel
Strand 5
A
829 833anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
787 788first strand
Strand 2
B
719 725anti-parallel
Strand 3
B
797 801anti-parallel
Strand 4
B
762 765anti-parallel
Strand 5
B
751 759anti-parallel
Strand 6
B
809 814anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
787 788first strand
Strand 2
B
719 725anti-parallel
Strand 3
B
699 705anti-parallel
Strand 4
B
817 824anti-parallel
Strand 5
B
829 833anti-parallel
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