Analysis of interatomic Contacts of Structural Units in PDB entry:
4RQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RQF entry

There are 3 chains in PDB entry 4RQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 5 U 67
A
 VAL 2ILE 476
B
 VAL 2PRO 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4RQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
15 27Right-handed alpha
Helix 3
3
A
31 64Right-handed alpha
Helix 4
4
A
99 134Right-handed alpha
Helix 5
5
A
148 153Right-handed alpha
Helix 6
6
A
169 177Right-handed alpha
Helix 7
7
A
182 189Right-handed alpha
Helix 8
8
A
198 218Right-handed alpha
Helix 9
9
A
231 238Right-handed alpha
Helix 10
10
A
239 246Right-handed alpha
Helix 11
11
A
272 278Right-handed alpha
Helix 12
12
A
279 281Right-handed 310
Helix 13
13
A
335 355Right-handed alpha
Helix 14
14
A
365 369Right-handed 310
Helix 15
15
A
400 406Right-handed alpha
Helix 16
16
A
432 444Right-handed alpha
Helix 17
17
A
455 459Right-handed 310
Helix 18
18
B
5 9Right-handed 310
Helix 19
19
B
16 27Right-handed alpha
Helix 20
20
B
30 71Right-handed alpha
Helix 21
21
B
92 98Right-handed alpha
Helix 22
22
B
99 134Right-handed alpha
Helix 23
23
B
148 153Right-handed alpha
Helix 24
24
B
169 177Right-handed alpha
Helix 25
25
B
182 190Right-handed alpha
Helix 26
26
B
198 218Right-handed alpha
Helix 27
27
B
231 238Right-handed alpha
Helix 28
28
B
239 246Right-handed alpha
Helix 29
29
B
272 278Right-handed alpha
Helix 30
30
B
332 334Right-handed 310
Helix 31
31
B
335 355Right-handed alpha
Helix 32
32
B
365 369Right-handed 310
Helix 33
33
B
400 407Right-handed alpha
Helix 34
34
B
432 444Right-handed alpha
Helix 35
35
B
453 458Right-handed alpha
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There are 7 sheets in PDB entry 4RQF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
359 363anti-parallel
Strand 3
A
375 383anti-parallel
Strand 4
A
388 397anti-parallel
Strand 5
A
424 431anti-parallel
Strand 6
A
320 330anti-parallel
Strand 7
A
292 301anti-parallel
Strand 8
A
221 224parallel
Strand 9
B
195 197anti-parallel
Strand 10
B
180 181anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
195 197anti-parallel
Strand 3
B
221 224anti-parallel
Strand 4
B
292 301parallel
Strand 5
B
320 330anti-parallel
Strand 6
B
424 431anti-parallel
Strand 7
B
388 397anti-parallel
Strand 8
B
375 383anti-parallel
Strand 9
B
359 363anti-parallel
Strand 10
B
154 159anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
264 268anti-parallel
Strand 3
A
249 252anti-parallel
Strand 4
B
248 252anti-parallel
Strand 5
B
264 268anti-parallel
Strand 6
B
228 230anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
409 410parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
467 469anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
408 409parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 451first strand
Strand 2
B
467 469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il