Analysis of interatomic Contacts of Structural Units in PDB entry:
4RT6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4RT6 entry

There are 2 chains in PDB entry 4RT6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	GLY 815
B	ILE 24	CYS 208

There are 10 helices in PDB entry 4RT6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	355	364	Right-handed alpha
Helix 2	2	A	385	389	Right-handed 310
Helix 3	3	A	451	455	Right-handed 310
Helix 4	4	A	527	533	Right-handed alpha
Helix 5	5	A	549	558	Right-handed alpha
Helix 6	6	A	559	562	Right-handed 310
Helix 7	7	A	619	623	Right-handed 310
Helix 8	8	A	695	697	Right-handed 310
Helix 9	9	A	802	814	Right-handed alpha
Helix 10	10	B	109	113	Right-handed alpha

There are 18 sheets in PDB entry 4RT6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	144	146	parallel
Strand 9	A	97	99	parallel
Strand 10	A	75	78	parallel
Strand 11	A	48	52	parallel
Strand 12	A	24	29	parallel
Strand 13	A	16	21	anti-parallel

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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	233	236	parallel
Strand 10	A	260	263	parallel
Strand 11	A	286	288	parallel

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There are 29 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	245	249	parallel
Strand 10	A	266	270	parallel
Strand 11	A	291	295	parallel
Strand 12	A	324	328	parallel
Strand 13	A	367	370	parallel
Strand 14	A	391	395	parallel
Strand 15	A	414	417	parallel
Strand 16	A	430	447	parallel
Strand 17	A	401	410	parallel
Strand 18	A	375	383	parallel
Strand 19	A	335	338	parallel
Strand 20	A	351	354	parallel
Strand 21	A	298	303	parallel
Strand 22	A	276	281	parallel
Strand 23	A	252	255	parallel
Strand 24	A	227	230	parallel
Strand 25	A	201	204	parallel
Strand 26	A	157	160	parallel
Strand 27	A	138	141	parallel
Strand 28	A	90	92	parallel
Strand 29	A	70	72	parallel

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There are 24 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	245	249	parallel
Strand 10	A	266	270	parallel
Strand 11	A	291	295	parallel
Strand 12	A	324	328	parallel
Strand 13	A	367	370	parallel
Strand 14	A	391	395	parallel
Strand 15	A	414	417	parallel
Strand 16	A	430	447	parallel
Strand 17	A	471	489	parallel
Strand 18	A	507	511	parallel
Strand 19	A	593	604	parallel
Strand 20	A	627	636	parallel
Strand 21	A	657	668	parallel
Strand 22	A	680	684	parallel
Strand 23	A	732	736	parallel
Strand 24	A	760	762	parallel

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There are 25 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	245	249	parallel
Strand 10	A	266	270	parallel
Strand 11	A	291	295	parallel
Strand 12	A	324	328	parallel
Strand 13	A	367	370	parallel
Strand 14	A	391	395	parallel
Strand 15	A	414	417	parallel
Strand 16	A	430	447	parallel
Strand 17	A	471	489	parallel
Strand 18	A	507	511	parallel
Strand 19	A	593	604	parallel
Strand 20	A	627	636	parallel
Strand 21	A	657	668	parallel
Strand 22	A	689	692	parallel
Strand 23	A	742	747	parallel
Strand 24	A	768	772	parallel
Strand 25	A	795	796	parallel

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There are 25 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	245	249	parallel
Strand 10	A	266	270	parallel
Strand 11	A	291	295	parallel
Strand 12	A	324	328	parallel
Strand 13	A	367	370	parallel
Strand 14	A	391	395	parallel
Strand 15	A	414	417	parallel
Strand 16	A	430	447	parallel
Strand 17	A	471	489	parallel
Strand 18	A	492	504	parallel
Strand 19	A	579	583	parallel
Strand 20	A	593	604	parallel
Strand 21	A	627	636	parallel
Strand 22	A	657	668	parallel
Strand 23	A	680	684	parallel
Strand 24	A	732	736	parallel
Strand 25	A	760	762	parallel

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There are 26 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	245	249	parallel
Strand 10	A	266	270	parallel
Strand 11	A	291	295	parallel
Strand 12	A	324	328	parallel
Strand 13	A	367	370	parallel
Strand 14	A	391	395	parallel
Strand 15	A	414	417	parallel
Strand 16	A	430	447	parallel
Strand 17	A	471	489	parallel
Strand 18	A	492	504	parallel
Strand 19	A	579	583	parallel
Strand 20	A	593	604	parallel
Strand 21	A	627	636	parallel
Strand 22	A	657	668	parallel
Strand 23	A	689	692	parallel
Strand 24	A	742	747	parallel
Strand 25	A	768	772	parallel
Strand 26	A	795	796	parallel

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There are 26 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	59	64	parallel
Strand 4	A	81	85	parallel
Strand 5	A	102	106	parallel
Strand 6	A	150	154	parallel
Strand 7	A	163	176	parallel
Strand 8	A	207	217	parallel
Strand 9	A	245	249	parallel
Strand 10	A	266	270	parallel
Strand 11	A	291	295	parallel
Strand 12	A	324	328	parallel
Strand 13	A	367	370	parallel
Strand 14	A	391	395	parallel
Strand 15	A	414	417	parallel
Strand 16	A	430	447	parallel
Strand 17	A	471	489	parallel
Strand 18	A	492	504	parallel
Strand 19	A	586	590	parallel
Strand 20	A	607	612	parallel
Strand 21	A	639	644	parallel
Strand 22	A	670	676	parallel
Strand 23	A	699	705	parallel
Strand 24	A	750	754	parallel
Strand 25	A	777	781	parallel
Strand 26	A	799	800	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	132	133	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	187	191	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	242	243	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	320	321	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	516	first strand
Strand 2	A	572	574	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	716	first strand
Strand 2	A	719	722	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	44	48	anti-parallel
Strand 3	B	51	54	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	107	108	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	135	140	anti-parallel
Strand 3	B	143	148	anti-parallel
Strand 4	B	154	157	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	174	179	anti-parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	199	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4RT6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4RT6