Analysis of interatomic Contacts of Structural Units in PDB entry:
4RTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RTM entry

There are 3 chains in PDB entry 4RTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 270
F
 T 1 G 11
G
 A 1 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4RTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 16Right-handed 310
Helix 2
2
A
17 25Right-handed alpha
Helix 3
3
A
39 44Right-handed alpha
Helix 4
4
A
56 69Right-handed alpha
Helix 5
5
A
69 79Right-handed alpha
Helix 6
6
A
80 81Right-handed 310
Helix 7
7
A
82 86Right-handed 310
Helix 8
8
A
87 101Right-handed alpha
Helix 9
9
A
103 118Right-handed alpha
Helix 10
10
A
119 122Right-handed 310
Helix 11
11
A
144 155Right-handed alpha
Helix 12
12
A
164 170Right-handed alpha
Helix 13
13
A
202 218Right-handed alpha
Helix 14
14
A
230 237Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4RTM.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
49 54parallel
Strand 3
A
30 33parallel
Strand 4
A
176 180parallel
Strand 5
A
223 228parallel
Strand 6
A
263 268anti-parallel
Strand 7
A
241 245anti-parallel
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