Analysis of interatomic Contacts of Structural Units in PDB entry:
4RUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RUN entry

There are 2 chains in PDB entry 4RUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8GLU 154
B
 SER 2LEU 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4RUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 30Right-handed 310
Helix 2
2
A
122 135Right-handed alpha
Helix 3
3
A
138 140Right-handed 310
Helix 4
4
B
6 11Right-handed alpha
Helix 5
5
B
121 135Right-handed alpha
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There are 4 sheets in PDB entry 4RUN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 66first strand
Strand 2
A
47 55anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
12 21anti-parallel
Strand 5
A
142 143anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
95 103anti-parallel
Strand 4
A
106 115anti-parallel
Strand 5
A
12 21anti-parallel
Strand 6
A
37 41anti-parallel
Strand 7
A
47 55anti-parallel
Strand 8
A
33 34anti-parallel
Strand 9
A
146 147parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
B
142 144anti-parallel
Strand 3
B
12 20anti-parallel
Strand 4
B
37 41anti-parallel
Strand 5
B
47 55anti-parallel
Strand 6
B
108 115first strand
Strand 7
B
95 101anti-parallel
Strand 8
B
82 88anti-parallel
Strand 9
B
74 77anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 66first strand
Strand 2
B
47 55anti-parallel
Strand 3
B
37 41anti-parallel
Strand 4
B
12 20anti-parallel
Strand 5
B
33 34first strand
Strand 6
B
146 147parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il