Analysis of interatomic Contacts of Structural Units in PDB entry:
4RV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4RV6 entry

There are 4 chains in PDB entry 4RV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 662	LYS 1010
B	LYS 662	LYS 1010
C	LYS 662	LYS 1010
D	LYS 662	VAL 886

There are 56 helices in PDB entry 4RV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	666	677	Right-handed alpha
Helix 2	2	A	678	689	Right-handed alpha
Helix 3	3	A	702	723	Right-handed alpha
Helix 4	4	A	725	740	Right-handed alpha
Helix 5	5	A	754	780	Right-handed alpha
Helix 6	6	A	788	797	Right-handed alpha
Helix 7	7	A	808	821	Right-handed alpha
Helix 8	8	A	843	849	Right-handed alpha
Helix 9	9	A	850	854	Right-handed 310
Helix 10	10	A	865	867	Right-handed 310
Helix 11	11	A	868	876	Right-handed alpha
Helix 12	12	A	900	907	Right-handed alpha
Helix 13	13	A	958	961	Right-handed 310
Helix 14	14	A	993	995	Right-handed 310
Helix 15	15	B	666	677	Right-handed alpha
Helix 16	16	B	678	689	Right-handed alpha
Helix 17	17	B	702	723	Right-handed alpha
Helix 18	18	B	725	740	Right-handed alpha
Helix 19	19	B	754	780	Right-handed alpha
Helix 20	20	B	788	797	Right-handed alpha
Helix 21	21	B	808	821	Right-handed alpha
Helix 22	22	B	843	849	Right-handed alpha
Helix 23	23	B	850	854	Right-handed 310
Helix 24	24	B	865	867	Right-handed 310
Helix 25	25	B	868	876	Right-handed alpha
Helix 26	26	B	900	907	Right-handed alpha
Helix 27	27	B	958	961	Right-handed 310
Helix 28	28	B	993	995	Right-handed 310
Helix 29	29	C	666	677	Right-handed alpha
Helix 30	30	C	678	689	Right-handed alpha
Helix 31	31	C	702	723	Right-handed alpha
Helix 32	32	C	725	740	Right-handed alpha
Helix 33	33	C	754	780	Right-handed alpha
Helix 34	34	C	788	797	Right-handed alpha
Helix 35	35	C	808	821	Right-handed alpha
Helix 36	36	C	843	849	Right-handed alpha
Helix 37	37	C	850	854	Right-handed 310
Helix 38	38	C	865	867	Right-handed 310
Helix 39	39	C	868	876	Right-handed alpha
Helix 40	40	C	900	907	Right-handed alpha
Helix 41	41	C	958	961	Right-handed 310
Helix 42	42	C	993	995	Right-handed 310
Helix 43	43	D	666	677	Right-handed alpha
Helix 44	44	D	678	689	Right-handed alpha
Helix 45	45	D	702	723	Right-handed alpha
Helix 46	46	D	725	740	Right-handed alpha
Helix 47	47	D	754	780	Right-handed alpha
Helix 48	48	D	788	797	Right-handed alpha
Helix 49	49	D	808	821	Right-handed alpha
Helix 50	50	D	843	849	Right-handed alpha
Helix 51	51	D	850	854	Right-handed 310
Helix 52	52	D	865	867	Right-handed 310
Helix 53	53	D	868	876	Right-handed alpha
Helix 54	54	D	900	907	Right-handed alpha
Helix 55	55	D	958	961	Right-handed 310
Helix 56	56	D	993	995	Right-handed 310

There are 16 sheets in PDB entry 4RV6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	803	first strand
Strand 2	A	829	841	anti-parallel
Strand 3	A	997	1009	anti-parallel
Strand 4	A	916	925	anti-parallel
Strand 5	A	857	864	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	988	991	anti-parallel
Strand 3	A	947	950	anti-parallel
Strand 4	A	929	932	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	976	first strand
Strand 2	A	952	956	anti-parallel
Strand 3	A	984	986	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	964	first strand
Strand 2	A	967	969	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	803	first strand
Strand 2	B	829	841	anti-parallel
Strand 3	B	997	1009	anti-parallel
Strand 4	B	916	925	anti-parallel
Strand 5	B	857	864	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	947	950	anti-parallel
Strand 4	B	929	932	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	976	first strand
Strand 2	B	952	956	anti-parallel
Strand 3	B	984	986	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	964	first strand
Strand 2	B	967	969	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	799	803	first strand
Strand 2	C	829	841	anti-parallel
Strand 3	C	997	1009	anti-parallel
Strand 4	C	916	925	anti-parallel
Strand 5	C	857	864	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	898	first strand
Strand 2	C	988	991	anti-parallel
Strand 3	C	947	950	anti-parallel
Strand 4	C	929	932	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	974	976	first strand
Strand 2	C	952	956	anti-parallel
Strand 3	C	984	986	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	962	964	first strand
Strand 2	C	967	969	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	803	first strand
Strand 2	D	829	841	anti-parallel
Strand 3	D	997	1009	anti-parallel
Strand 4	D	916	925	anti-parallel
Strand 5	D	857	864	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	898	first strand
Strand 2	D	988	991	anti-parallel
Strand 3	D	947	950	anti-parallel
Strand 4	D	929	932	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	976	first strand
Strand 2	D	952	956	anti-parallel
Strand 3	D	984	986	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	964	first strand
Strand 2	D	967	969	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4RV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4RV6