Analysis of interatomic Contacts of Structural Units in PDB entry:
4RY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RY1 entry

There are 2 chains in PDB entry 4RY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30ARG 439
B
 MET 30ARG 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4RY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 58Right-handed alpha
Helix 2
2
A
72 83Right-handed alpha
Helix 3
3
A
93 95Right-handed 310
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
109 112Right-handed 310
Helix 6
6
A
113 118Right-handed alpha
Helix 7
7
A
119 122Right-handed 310
Helix 8
8
A
123 129Right-handed alpha
Helix 9
9
A
152 159Right-handed alpha
Helix 10
10
A
165 181Right-handed alpha
Helix 11
11
A
196 212Right-handed alpha
Helix 12
12
A
226 243Right-handed alpha
Helix 13
13
A
248 254Right-handed alpha
Helix 14
14
A
259 262Right-handed 310
Helix 15
15
A
263 268Right-handed alpha
Helix 16
16
A
280 286Right-handed alpha
Helix 17
17
A
326 339Right-handed alpha
Helix 18
18
A
340 348Right-handed alpha
Helix 19
19
A
356 366Right-handed alpha
Helix 20
20
A
373 385Right-handed alpha
Helix 21
21
A
393 397Right-handed 310
Helix 22
22
A
398 414Right-handed alpha
Helix 23
23
A
418 438Right-handed alpha
Helix 24
24
B
40 58Right-handed alpha
Helix 25
25
B
72 83Right-handed alpha
Helix 26
26
B
93 95Right-handed 310
Helix 27
27
B
96 101Right-handed alpha
Helix 28
28
B
109 112Right-handed 310
Helix 29
29
B
113 118Right-handed alpha
Helix 30
30
B
119 122Right-handed 310
Helix 31
31
B
123 129Right-handed alpha
Helix 32
32
B
152 159Right-handed alpha
Helix 33
33
B
165 181Right-handed alpha
Helix 34
34
B
196 212Right-handed alpha
Helix 35
35
B
226 243Right-handed alpha
Helix 36
36
B
248 254Right-handed alpha
Helix 37
37
B
259 262Right-handed 310
Helix 38
38
B
263 268Right-handed alpha
Helix 39
39
B
280 286Right-handed alpha
Helix 40
40
B
326 339Right-handed alpha
Helix 41
41
B
340 348Right-handed alpha
Helix 42
42
B
356 366Right-handed alpha
Helix 43
43
B
373 384Right-handed alpha
Helix 44
44
B
393 397Right-handed 310
Helix 45
45
B
398 414Right-handed alpha
Helix 46
46
B
418 438Right-handed alpha
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There are 8 sheets in PDB entry 4RY1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 68first strand
Strand 2
A
31 38parallel
Strand 3
A
89 92parallel
Strand 4
A
312 320anti-parallel
Strand 5
A
139 151anti-parallel
Strand 6
A
273 277anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 68first strand
Strand 2
A
31 38parallel
Strand 3
A
89 92parallel
Strand 4
A
312 320anti-parallel
Strand 5
A
139 151anti-parallel
Strand 6
A
294 296anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
135 136anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
222 223anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 68first strand
Strand 2
B
31 38parallel
Strand 3
B
89 92parallel
Strand 4
B
312 320anti-parallel
Strand 5
B
139 151anti-parallel
Strand 6
B
273 277anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 68first strand
Strand 2
B
31 38parallel
Strand 3
B
89 92parallel
Strand 4
B
312 320anti-parallel
Strand 5
B
139 151anti-parallel
Strand 6
B
294 296anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
135 136anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
222 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il