Analysis of interatomic Contacts of Structural Units in PDB entry:
4RY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RY8 entry

There are 4 chains in PDB entry 4RY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32ASN 346
B
 PRO 26ASN 346
C
 GLN 24ASN 346
D
 PRO 26ASN 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4RY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 64Right-handed alpha
Helix 2
2
A
75 89Right-handed alpha
Helix 3
3
A
100 114Right-handed alpha
Helix 4
4
A
136 152Right-handed alpha
Helix 5
5
A
166 183Right-handed alpha
Helix 6
6
A
198 214Right-handed alpha
Helix 7
7
A
224 239Right-handed alpha
Helix 8
8
A
240 244Right-handed 310
Helix 9
9
A
252 261Right-handed alpha
Helix 10
10
A
273 290Right-handed alpha
Helix 11
11
A
307 314Right-handed alpha
Helix 12
12
A
317 325Right-handed alpha
Helix 13
13
A
326 329Right-handed 310
Helix 14
14
A
336 346Right-handed alpha
Helix 15
15
B
26 34Right-handed 310
Helix 16
16
B
46 64Right-handed alpha
Helix 17
17
B
75 89Right-handed alpha
Helix 18
18
B
100 114Right-handed alpha
Helix 19
19
B
136 152Right-handed alpha
Helix 20
20
B
166 183Right-handed alpha
Helix 21
21
B
198 214Right-handed alpha
Helix 22
22
B
224 239Right-handed alpha
Helix 23
23
B
240 244Right-handed 310
Helix 24
24
B
252 260Right-handed alpha
Helix 25
25
B
273 290Right-handed alpha
Helix 26
26
B
307 313Right-handed alpha
Helix 27
27
B
317 325Right-handed alpha
Helix 28
28
B
326 329Right-handed 310
Helix 29
29
B
336 346Right-handed alpha
Helix 30
30
C
46 64Right-handed alpha
Helix 31
31
C
75 89Right-handed alpha
Helix 32
32
C
100 114Right-handed alpha
Helix 33
33
C
136 152Right-handed alpha
Helix 34
34
C
166 183Right-handed alpha
Helix 35
35
C
198 214Right-handed alpha
Helix 36
36
C
224 239Right-handed alpha
Helix 37
37
C
240 244Right-handed 310
Helix 38
38
C
252 260Right-handed alpha
Helix 39
39
C
273 290Right-handed alpha
Helix 40
40
C
307 313Right-handed alpha
Helix 41
41
C
317 325Right-handed alpha
Helix 42
42
C
326 329Right-handed 310
Helix 43
43
C
336 346Right-handed alpha
Helix 44
44
D
26 34Right-handed 310
Helix 45
45
D
46 64Right-handed alpha
Helix 46
46
D
75 89Right-handed alpha
Helix 47
47
D
100 114Right-handed alpha
Helix 48
48
D
136 152Right-handed alpha
Helix 49
49
D
166 183Right-handed alpha
Helix 50
50
D
198 214Right-handed alpha
Helix 51
51
D
224 239Right-handed alpha
Helix 52
52
D
240 244Right-handed 310
Helix 53
53
D
252 261Right-handed alpha
Helix 54
54
D
273 290Right-handed alpha
Helix 55
55
D
307 313Right-handed alpha
Helix 56
56
D
317 325Right-handed alpha
Helix 57
57
D
326 329Right-handed 310
Helix 58
58
D
336 346Right-handed alpha
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There are 8 sheets in PDB entry 4RY8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
36 41parallel
Strand 3
A
93 97parallel
Strand 4
A
117 121parallel
Strand 5
A
132 134parallel
Strand 6
A
297 299parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
155 161parallel
Strand 3
A
219 222parallel
Strand 4
A
245 249parallel
Strand 5
A
266 271parallel
Strand 6
A
303 306anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
36 41parallel
Strand 3
B
93 97parallel
Strand 4
B
117 121parallel
Strand 5
B
132 134parallel
Strand 6
B
297 299parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 192first strand
Strand 2
B
156 161parallel
Strand 3
B
219 222parallel
Strand 4
B
245 249parallel
Strand 5
B
266 271parallel
Strand 6
B
303 306anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
36 41parallel
Strand 3
C
93 97parallel
Strand 4
C
117 121parallel
Strand 5
C
132 134parallel
Strand 6
C
297 299parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 192first strand
Strand 2
C
156 161parallel
Strand 3
C
219 222parallel
Strand 4
C
245 249parallel
Strand 5
C
266 271parallel
Strand 6
C
303 306anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 71first strand
Strand 2
D
36 41parallel
Strand 3
D
93 97parallel
Strand 4
D
117 121parallel
Strand 5
D
132 134parallel
Strand 6
D
297 299parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 192first strand
Strand 2
D
155 161parallel
Strand 3
D
219 222parallel
Strand 4
D
245 249parallel
Strand 5
D
266 271parallel
Strand 6
D
303 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il