Analysis of interatomic Contacts of Structural Units in PDB entry:
4RY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RY9 entry

There are 2 chains in PDB entry 4RY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34PHE 330
B
 GLY 34PHE 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4RY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 64Right-handed alpha
Helix 2
2
A
76 90Right-handed alpha
Helix 3
3
A
105 115Right-handed alpha
Helix 4
4
A
139 156Right-handed alpha
Helix 5
5
A
171 194Right-handed alpha
Helix 6
6
A
209 224Right-handed alpha
Helix 7
7
A
234 249Right-handed alpha
Helix 8
8
A
262 271Right-handed alpha
Helix 9
9
A
281 298Right-handed alpha
Helix 10
10
A
319 324Right-handed alpha
Helix 11
11
B
47 64Right-handed alpha
Helix 12
12
B
76 90Right-handed alpha
Helix 13
13
B
105 115Right-handed alpha
Helix 14
14
B
139 156Right-handed alpha
Helix 15
15
B
171 194Right-handed alpha
Helix 16
16
B
209 224Right-handed alpha
Helix 17
17
B
234 249Right-handed alpha
Helix 18
18
B
262 271Right-handed alpha
Helix 19
19
B
281 298Right-handed alpha
Helix 20
20
B
319 324Right-handed alpha
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There are 6 sheets in PDB entry 4RY9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
37 42parallel
Strand 3
A
92 98parallel
Strand 4
A
118 122parallel
Strand 5
A
134 137parallel
Strand 6
A
307 309parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
161 166parallel
Strand 3
A
229 232parallel
Strand 4
A
254 257parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
314 315anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
37 42parallel
Strand 3
B
92 98parallel
Strand 4
B
118 122parallel
Strand 5
B
134 137parallel
Strand 6
B
307 309parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 205first strand
Strand 2
B
161 166parallel
Strand 3
B
229 232parallel
Strand 4
B
254 257parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
314 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il