Analysis of interatomic Contacts of Structural Units in PDB entry:
4RYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4RYE entry

There are 4 chains in PDB entry 4RYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 28	LEU 291
B	ASP 28	LEU 291
C	ASP 28	LEU 291
D	ASP 28	LEU 291

There are 40 helices in PDB entry 4RYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	67	70	Right-handed 310
Helix 2	2	A	71	83	Right-handed alpha
Helix 3	3	A	92	97	Right-handed 310
Helix 4	4	A	113	123	Right-handed alpha
Helix 5	5	A	125	136	Right-handed alpha
Helix 6	6	A	138	153	Right-handed alpha
Helix 7	7	A	176	189	Right-handed alpha
Helix 8	8	A	190	199	Right-handed alpha
Helix 9	9	A	218	223	Right-handed alpha
Helix 10	10	A	267	282	Right-handed alpha
Helix 11	11	B	67	70	Right-handed 310
Helix 12	12	B	71	83	Right-handed alpha
Helix 13	13	B	92	97	Right-handed 310
Helix 14	14	B	113	123	Right-handed alpha
Helix 15	15	B	125	136	Right-handed alpha
Helix 16	16	B	138	154	Right-handed alpha
Helix 17	17	B	176	189	Right-handed alpha
Helix 18	18	B	190	199	Right-handed alpha
Helix 19	19	B	218	223	Right-handed alpha
Helix 20	20	B	267	282	Right-handed alpha
Helix 21	21	C	67	70	Right-handed 310
Helix 22	22	C	71	83	Right-handed alpha
Helix 23	23	C	92	97	Right-handed 310
Helix 24	24	C	113	123	Right-handed alpha
Helix 25	25	C	125	136	Right-handed alpha
Helix 26	26	C	138	154	Right-handed alpha
Helix 27	27	C	176	189	Right-handed alpha
Helix 28	28	C	190	199	Right-handed alpha
Helix 29	29	C	218	223	Right-handed alpha
Helix 30	30	C	267	282	Right-handed alpha
Helix 31	31	D	67	70	Right-handed 310
Helix 32	32	D	71	83	Right-handed alpha
Helix 33	33	D	92	97	Right-handed 310
Helix 34	34	D	113	123	Right-handed alpha
Helix 35	35	D	125	136	Right-handed alpha
Helix 36	36	D	138	154	Right-handed alpha
Helix 37	37	D	176	189	Right-handed alpha
Helix 38	38	D	190	199	Right-handed alpha
Helix 39	39	D	218	223	Right-handed alpha
Helix 40	40	D	267	282	Right-handed alpha

There are 12 sheets in PDB entry 4RYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	234	first strand
Strand 2	A	238	247	anti-parallel
Strand 3	A	250	259	anti-parallel
Strand 4	A	44	49	anti-parallel
Strand 5	A	54	59	anti-parallel
Strand 6	A	289	290	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	110	112	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	206	first strand
Strand 2	A	209	214	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	234	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	250	259	anti-parallel
Strand 4	B	44	49	anti-parallel
Strand 5	B	54	59	anti-parallel
Strand 6	B	289	290	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	110	112	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	205	first strand
Strand 2	B	210	214	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	234	first strand
Strand 2	C	238	247	anti-parallel
Strand 3	C	250	259	anti-parallel
Strand 4	C	44	49	anti-parallel
Strand 5	C	54	59	anti-parallel
Strand 6	C	289	290	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	110	112	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	204	first strand
Strand 2	C	211	214	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	234	first strand
Strand 2	D	238	247	anti-parallel
Strand 3	D	250	259	anti-parallel
Strand 4	D	44	49	anti-parallel
Strand 5	D	54	59	anti-parallel
Strand 6	D	289	290	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	110	112	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	205	first strand
Strand 2	D	210	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4RYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4RYE