Analysis of interatomic Contacts of Structural Units in PDB entry:
4RYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4RYF entry

There are 8 chains in PDB entry 4RYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 17	GLY 195
B	ILE 17	ASP 194
C	ILE 17	ASP 194
D	ILE 17	GLY 195
E	ILE 17	ASP 194
F	ILE 17	ASP 194
G	ILE 17	ASP 194
H	LEU 3	LYS 26

There are112 helices in PDB entry 4RYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	18	28	Right-handed alpha
Helix 2	2	A	38	56	Right-handed alpha
Helix 3	3	A	70	84	Right-handed alpha
Helix 4	4	A	98	105	Right-handed alpha
Helix 5	5	A	106	107	Right-handed 310
Helix 6	6	A	108	110	Right-handed 310
Helix 7	7	A	133	159	Right-handed alpha
Helix 8	8	A	161	169	Right-handed alpha
Helix 9	9	A	177	183	Right-handed alpha
Helix 10	10	B	18	28	Right-handed alpha
Helix 11	11	B	38	56	Right-handed alpha
Helix 12	12	B	70	84	Right-handed alpha
Helix 13	13	B	98	105	Right-handed alpha
Helix 14	14	B	106	107	Right-handed 310
Helix 15	15	B	108	110	Right-handed 310
Helix 16	16	B	133	159	Right-handed alpha
Helix 17	17	B	161	169	Right-handed alpha
Helix 18	18	B	177	183	Right-handed alpha
Helix 19	19	C	18	28	Right-handed alpha
Helix 20	20	C	38	56	Right-handed alpha
Helix 21	21	C	70	84	Right-handed alpha
Helix 22	22	C	98	105	Right-handed alpha
Helix 23	23	C	106	107	Right-handed 310
Helix 24	24	C	108	110	Right-handed 310
Helix 25	25	C	133	159	Right-handed alpha
Helix 26	26	C	161	169	Right-handed alpha
Helix 27	27	C	177	183	Right-handed alpha
Helix 28	28	D	18	28	Right-handed alpha
Helix 29	29	D	38	56	Right-handed alpha
Helix 30	30	D	70	84	Right-handed alpha
Helix 31	31	D	98	105	Right-handed alpha
Helix 32	32	D	106	107	Right-handed 310
Helix 33	33	D	108	110	Right-handed 310
Helix 34	34	D	133	159	Right-handed alpha
Helix 35	35	D	161	169	Right-handed alpha
Helix 36	36	D	177	183	Right-handed alpha
Helix 37	37	E	18	28	Right-handed alpha
Helix 38	38	E	38	56	Right-handed alpha
Helix 39	39	E	70	84	Right-handed alpha
Helix 40	40	E	98	105	Right-handed alpha
Helix 41	41	E	106	107	Right-handed 310
Helix 42	42	E	108	110	Right-handed 310
Helix 43	43	E	133	159	Right-handed alpha
Helix 44	44	E	161	169	Right-handed alpha
Helix 45	45	E	177	183	Right-handed alpha
Helix 46	46	F	18	28	Right-handed alpha
Helix 47	47	F	38	56	Right-handed alpha
Helix 48	48	F	70	84	Right-handed alpha
Helix 49	49	F	98	105	Right-handed alpha
Helix 50	50	F	106	107	Right-handed 310
Helix 51	51	F	108	110	Right-handed 310
Helix 52	52	F	133	159	Right-handed alpha
Helix 53	53	F	161	169	Right-handed alpha
Helix 54	54	F	177	183	Right-handed alpha
Helix 55	55	G	18	28	Right-handed alpha
Helix 56	56	G	38	56	Right-handed alpha
Helix 57	57	G	70	84	Right-handed alpha
Helix 58	58	G	98	105	Right-handed alpha
Helix 59	59	G	106	107	Right-handed 310
Helix 60	60	G	108	110	Right-handed 310
Helix 61	61	G	133	159	Right-handed alpha
Helix 62	62	G	161	169	Right-handed alpha
Helix 63	63	G	177	183	Right-handed alpha
Helix 64	64	H	20	26	Right-handed alpha
Helix 65	65	H	37	55	Right-handed alpha
Helix 66	66	H	70	84	Right-handed alpha
Helix 67	67	H	98	106	Right-handed alpha
Helix 68	68	H	133	159	Right-handed alpha
Helix 69	69	H	161	169	Right-handed alpha
Helix 70	70	H	176	184	Right-handed alpha
Helix 71	71	I	19	26	Right-handed alpha
Helix 72	72	I	37	55	Right-handed alpha
Helix 73	73	I	70	84	Right-handed alpha
Helix 74	74	I	98	106	Right-handed alpha
Helix 75	75	I	133	159	Right-handed alpha
Helix 76	76	I	161	169	Right-handed alpha
Helix 77	77	I	176	184	Right-handed alpha
Helix 78	78	J	19	26	Right-handed alpha
Helix 79	79	J	37	55	Right-handed alpha
Helix 80	80	J	70	84	Right-handed alpha
Helix 81	81	J	98	106	Right-handed alpha
Helix 82	82	J	133	159	Right-handed alpha
Helix 83	83	J	161	169	Right-handed alpha
Helix 84	84	J	176	184	Right-handed alpha
Helix 85	85	K	20	26	Right-handed alpha
Helix 86	86	K	37	55	Right-handed alpha
Helix 87	87	K	70	84	Right-handed alpha
Helix 88	88	K	98	106	Right-handed alpha
Helix 89	89	K	133	159	Right-handed alpha
Helix 90	90	K	161	169	Right-handed alpha
Helix 91	91	K	176	184	Right-handed alpha
Helix 92	92	L	19	26	Right-handed alpha
Helix 93	93	L	37	55	Right-handed alpha
Helix 94	94	L	70	84	Right-handed alpha
Helix 95	95	L	98	106	Right-handed alpha
Helix 96	96	L	133	159	Right-handed alpha
Helix 97	97	L	161	169	Right-handed alpha
Helix 98	98	L	176	183	Right-handed alpha
Helix 99	99	M	20	26	Right-handed alpha
Helix 100	100	M	37	55	Right-handed alpha
Helix 101	101	M	70	84	Right-handed alpha
Helix 102	102	M	98	106	Right-handed alpha
Helix 103	103	M	133	159	Right-handed alpha
Helix 104	104	M	161	169	Right-handed alpha
Helix 105	105	M	176	184	Right-handed alpha
Helix 106	106	N	20	26	Right-handed alpha
Helix 107	107	N	37	55	Right-handed alpha
Helix 108	108	N	70	84	Right-handed alpha
Helix 109	109	N	98	106	Right-handed alpha
Helix 110	110	N	133	159	Right-handed alpha
Helix 111	111	N	161	169	Right-handed alpha
Helix 112	112	N	176	184	Right-handed alpha

There are 39 sheets in PDB entry 4RYF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	60	66	parallel
Strand 3	A	88	97	parallel
Strand 4	A	112	122	parallel
Strand 5	A	173	176	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	60	66	parallel
Strand 3	A	88	97	parallel
Strand 4	A	112	122	parallel
Strand 5	A	188	189	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	132	first strand
Strand 2	H	126	132	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	60	66	parallel
Strand 3	B	88	97	parallel
Strand 4	B	112	122	parallel
Strand 5	B	173	176	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	60	66	parallel
Strand 3	B	88	97	parallel
Strand 4	B	112	122	parallel
Strand 5	B	188	189	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	132	first strand
Strand 2	N	126	132	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	60	66	parallel
Strand 3	C	88	97	parallel
Strand 4	C	112	122	parallel
Strand 5	C	173	176	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	60	66	parallel
Strand 3	C	88	97	parallel
Strand 4	C	112	122	parallel
Strand 5	C	188	189	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	M	126	132	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	60	66	parallel
Strand 3	D	88	97	parallel
Strand 4	D	112	122	parallel
Strand 5	D	173	176	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	60	66	parallel
Strand 3	D	88	97	parallel
Strand 4	D	112	122	parallel
Strand 5	D	188	189	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	132	first strand
Strand 2	L	126	132	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	60	66	parallel
Strand 3	E	88	97	parallel
Strand 4	E	112	122	parallel
Strand 5	E	173	176	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	60	66	parallel
Strand 3	E	88	97	parallel
Strand 4	E	112	122	parallel
Strand 5	E	188	189	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	132	first strand
Strand 2	K	126	132	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	60	66	parallel
Strand 3	F	88	97	parallel
Strand 4	F	112	122	parallel
Strand 5	F	173	176	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	60	66	parallel
Strand 3	F	88	97	parallel
Strand 4	F	112	122	parallel
Strand 5	F	188	189	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	132	first strand
Strand 2	J	126	132	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	60	66	parallel
Strand 3	G	88	97	parallel
Strand 4	G	112	122	parallel
Strand 5	G	173	176	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	60	66	parallel
Strand 3	G	88	97	parallel
Strand 4	G	112	122	parallel
Strand 5	G	188	189	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	132	first strand
Strand 2	I	126	132	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	18	19	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	60	66	parallel
Strand 3	H	88	97	parallel
Strand 4	H	119	122	parallel
Strand 5	H	173	175	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	60	66	parallel
Strand 3	H	88	97	parallel
Strand 4	H	112	114	parallel
Strand 5	H	188	189	parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	32	first strand
Strand 2	I	60	66	parallel
Strand 3	I	88	97	parallel
Strand 4	I	119	122	parallel
Strand 5	I	173	175	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	32	first strand
Strand 2	I	60	66	parallel
Strand 3	I	88	97	parallel
Strand 4	I	112	114	parallel
Strand 5	I	188	189	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	60	66	parallel
Strand 3	J	88	97	parallel
Strand 4	J	119	122	parallel
Strand 5	J	173	175	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	60	66	parallel
Strand 3	J	88	97	parallel
Strand 4	J	112	114	parallel
Strand 5	J	188	189	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	7	first strand
Strand 2	K	18	19	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	60	66	parallel
Strand 3	K	88	97	parallel
Strand 4	K	119	122	parallel
Strand 5	K	173	175	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	60	66	parallel
Strand 3	K	88	97	parallel
Strand 4	K	112	114	parallel
Strand 5	K	188	189	parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	60	66	parallel
Strand 3	L	88	97	parallel
Strand 4	L	119	122	parallel
Strand 5	L	173	175	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	60	66	parallel
Strand 3	L	88	97	parallel
Strand 4	L	112	114	parallel
Strand 5	L	188	189	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	7	first strand
Strand 2	M	18	19	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	60	66	parallel
Strand 3	M	88	97	parallel
Strand 4	M	119	122	parallel
Strand 5	M	173	175	anti-parallel

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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	60	66	parallel
Strand 3	M	88	97	parallel
Strand 4	M	112	114	parallel
Strand 5	M	188	189	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	7	first strand
Strand 2	N	18	19	anti-parallel

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There are 5 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	32	first strand
Strand 2	N	60	66	parallel
Strand 3	N	88	97	parallel
Strand 4	N	119	122	parallel
Strand 5	N	173	175	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	32	first strand
Strand 2	N	60	66	parallel
Strand 3	N	88	97	parallel
Strand 4	N	112	114	parallel
Strand 5	N	188	189	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4RYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4RYF