Analysis of interatomic Contacts of Structural Units in PDB entry:
4S1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4S1M entry

There are 4 chains in PDB entry 4S1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 262
A
 ILE 264ILE 279
B
 MET 1ASN 262
B
 ILE 264ILE 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4S1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
56 70Right-handed alpha
Helix 3
3
A
86 103Right-handed alpha
Helix 4
4
A
123 134Right-handed alpha
Helix 5
5
A
135 137Right-handed 310
Helix 6
6
A
143 152Right-handed alpha
Helix 7
7
A
157 171Right-handed alpha
Helix 8
8
A
213 230Right-handed alpha
Helix 9
9
A
233 251Right-handed alpha
Helix 10
10
A
259 264Right-handed alpha
Helix 11
11
A
265 267Right-handed 310
Helix 12
12
B
17 29Right-handed alpha
Helix 13
13
B
56 70Right-handed alpha
Helix 14
14
B
86 103Right-handed alpha
Helix 15
15
B
123 134Right-handed alpha
Helix 16
16
B
135 137Right-handed 310
Helix 17
17
B
143 152Right-handed alpha
Helix 18
18
B
157 171Right-handed alpha
Helix 19
19
B
215 230Right-handed alpha
Helix 20
20
B
233 251Right-handed alpha
Helix 21
21
B
263 267Right-handed 310
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There are 6 sheets in PDB entry 4S1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
5 9parallel
Strand 3
A
78 81parallel
Strand 4
A
107 110parallel
Strand 5
A
139 140parallel
Strand 6
A
175 183parallel
Strand 7
A
186 193anti-parallel
Strand 8
A
202 207anti-parallel
Strand 9
A
276 278anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
52 54anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
119 120anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
5 9parallel
Strand 3
B
78 81parallel
Strand 4
B
107 110parallel
Strand 5
B
139 140parallel
Strand 6
B
175 183parallel
Strand 7
B
186 193anti-parallel
Strand 8
B
202 206anti-parallel
Strand 9
B
276 278anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
52 54anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il