Analysis of interatomic Contacts of Structural Units in PDB entry:
4S28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4S28 entry

There is 1 chain in PDB entry 4S28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 79ALA 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4S28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 92Right-handed alpha
Helix 2
2
A
148 159Right-handed alpha
Helix 3
3
A
164 171Right-handed alpha
Helix 4
4
A
175 186Right-handed alpha
Helix 5
5
A
188 198Right-handed alpha
Helix 6
6
A
237 251Right-handed alpha
Helix 7
7
A
264 275Right-handed alpha
Helix 8
8
A
283 292Right-handed alpha
Helix 9
9
A
295 299Right-handed 310
Helix 10
10
A
300 315Right-handed alpha
Helix 11
11
A
326 334Right-handed 310
Helix 12
12
A
342 356Right-handed alpha
Helix 13
13
A
359 364Right-handed alpha
Helix 14
14
A
364 376Right-handed alpha
Helix 15
15
A
389 393Right-handed 310
Helix 16
16
A
395 415Right-handed alpha
Helix 17
17
A
428 430Right-handed 310
Helix 18
18
A
431 443Right-handed alpha
Helix 19
19
A
462 477Right-handed alpha
Helix 20
20
A
495 517Right-handed alpha
Helix 21
21
A
522 535Right-handed alpha
Helix 22
22
A
537 545Right-handed alpha
Helix 23
23
A
547 557Right-handed alpha
Helix 24
24
A
561 567Right-handed 310
Helix 25
25
A
578 591Right-handed alpha
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There are 3 sheets in PDB entry 4S28. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 104first strand
Strand 2
A
109 118anti-parallel
Strand 3
A
127 129anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
217 218anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 229first strand
Strand 2
A
255 258parallel
Strand 3
A
280 282parallel
Strand 4
A
318 321parallel
Strand 5
A
378 381parallel
Strand 6
A
419 423parallel
Strand 7
A
448 451parallel
Strand 8
A
481 483parallel
Strand 9
A
224 229parallel
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