Analysis of interatomic Contacts of Structural Units in PDB entry:
4SBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4SBV entry

There are 3 chains in PDB entry 4SBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 62LEU 260
B
 SER 62LEU 260
C
 GLN 39LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4SBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 96Right-handed 310
Helix 2
2
A
97 105Right-handed alpha
Helix 3
3
A
146 152Right-handed alpha
Helix 4
4
A
201 210Right-handed alpha
Helix 5
5
A
215 220Right-handed alpha
Helix 6
6
A
255 259Right-handed 310
Helix 7
7
B
92 97Right-handed alpha
Helix 8
8
B
97 105Right-handed alpha
Helix 9
9
B
146 151Right-handed alpha
Helix 10
10
B
167 173Right-handed alpha
Helix 11
11
B
178 182Right-handed 310
Helix 12
12
B
188 192Right-handed 310
Helix 13
13
B
201 210Right-handed alpha
Helix 14
14
B
211 214Right-handed 310
Helix 15
15
B
215 220Right-handed alpha
Helix 16
16
B
255 259Right-handed 310
Helix 17
17
C
92 97Right-handed alpha
Helix 18
18
C
99 105Right-handed alpha
Helix 19
19
C
146 151Right-handed alpha
Helix 20
20
C
167 173Right-handed alpha
Helix 21
21
C
188 192Right-handed 310
Helix 22
22
C
201 212Right-handed alpha
Helix 23
23
C
215 220Right-handed alpha
Helix 24
24
C
255 259Right-handed 310
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There are 9 sheets in PDB entry 4SBV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 80first strand
Strand 2
A
237 250anti-parallel
Strand 3
A
109 121anti-parallel
Strand 4
A
184 186anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 80first strand
Strand 2
A
237 250anti-parallel
Strand 3
A
109 121anti-parallel
Strand 4
A
197 198anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
130 136anti-parallel
Strand 4
A
157 160anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 80first strand
Strand 2
B
237 250anti-parallel
Strand 3
B
109 121anti-parallel
Strand 4
B
184 186anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 80first strand
Strand 2
B
237 250anti-parallel
Strand 3
B
109 121anti-parallel
Strand 4
B
197 198anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
223 229anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
154 160anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
67 80anti-parallel
Strand 3
C
237 250anti-parallel
Strand 4
C
109 121anti-parallel
Strand 5
C
184 186anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
67 80anti-parallel
Strand 3
C
237 250anti-parallel
Strand 4
C
109 121anti-parallel
Strand 5
C
197 198anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
223 228anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
157 160anti-parallel
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