Analysis of interatomic Contacts of Structural Units in PDB entry:
4TJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TJY entry

There are 4 chains in PDB entry 4TJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 962	PRO 1160
B	LEU 954	PRO 1160
C	ASN 953	PRO 1160
D	PHE 965	PRO 1160

There are 28 helices in PDB entry 4TJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	962	975	Right-handed alpha
Helix 2	AA2	A	1002	1019	Right-handed alpha
Helix 3	AA3	A	1035	1043	Right-handed alpha
Helix 4	AA4	A	1045	1049	Right-handed 310
Helix 5	AA5	A	1064	1070	Right-handed alpha
Helix 6	AA6	A	1074	1078	Right-handed 310
Helix 7	AA7	A	1143	1145	Right-handed 310
Helix 8	AA8	B	963	975	Right-handed alpha
Helix 9	AA9	B	1002	1020	Right-handed alpha
Helix 10	AB1	B	1035	1043	Right-handed alpha
Helix 11	AB2	B	1045	1049	Right-handed 310
Helix 12	AB3	B	1064	1070	Right-handed alpha
Helix 13	AB4	B	1074	1078	Right-handed 310
Helix 14	AB5	B	1143	1145	Right-handed 310
Helix 15	AB6	C	962	975	Right-handed alpha
Helix 16	AB7	C	1002	1020	Right-handed alpha
Helix 17	AB8	C	1035	1043	Right-handed alpha
Helix 18	AB9	C	1045	1049	Right-handed 310
Helix 19	AC1	C	1064	1070	Right-handed alpha
Helix 20	AC2	C	1074	1078	Right-handed 310
Helix 21	AC3	C	1143	1145	Right-handed 310
Helix 22	AC4	D	966	975	Right-handed alpha
Helix 23	AC5	D	1002	1020	Right-handed alpha
Helix 24	AC6	D	1035	1043	Right-handed alpha
Helix 25	AC7	D	1045	1049	Right-handed 310
Helix 26	AC8	D	1064	1070	Right-handed alpha
Helix 27	AC9	D	1074	1078	Right-handed 310
Helix 28	AD1	D	1143	1145	Right-handed 310

There are 8 sheets in PDB entry 4TJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	999	first strand
Strand 2	A	1147	1157	anti-parallel
Strand 3	A	1094	1102	anti-parallel
Strand 4	A	1026	1031	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1059	1061	first strand
Strand 2	A	1138	1141	anti-parallel
Strand 3	A	1124	1127	anti-parallel
Strand 4	A	1106	1109	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	955	956	first strand
Strand 2	B	992	1000	anti-parallel
Strand 3	B	1147	1157	anti-parallel
Strand 4	B	1094	1102	anti-parallel
Strand 5	B	1026	1031	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1061	first strand
Strand 2	B	1138	1141	anti-parallel
Strand 3	B	1124	1127	anti-parallel
Strand 4	B	1106	1109	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	955	957	first strand
Strand 2	C	992	1000	anti-parallel
Strand 3	C	1147	1157	anti-parallel
Strand 4	C	1094	1102	anti-parallel
Strand 5	C	1026	1031	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1059	1061	first strand
Strand 2	C	1138	1141	anti-parallel
Strand 3	C	1124	1127	anti-parallel
Strand 4	C	1106	1109	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	992	999	first strand
Strand 2	D	1147	1157	anti-parallel
Strand 3	D	1094	1102	anti-parallel
Strand 4	D	1026	1031	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1062	first strand
Strand 2	D	1138	1141	anti-parallel
Strand 3	D	1124	1127	anti-parallel
Strand 4	D	1106	1109	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TJY