Analysis of interatomic Contacts of Structural Units in PDB entry:
4TLM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TLM entry

There are 2 chains in PDB entry 4TLM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ALA 833
B	LYS 26	PHE 805

There are109 helices in PDB entry 4TLM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	70	81	Right-handed alpha
Helix 3	AA3	A	82	86	Right-handed 310
Helix 4	AA4	A	105	114	Right-handed alpha
Helix 5	AA5	A	125	129	Right-handed 310
Helix 6	AA6	A	144	146	Right-handed 310
Helix 7	AA7	A	147	159	Right-handed alpha
Helix 8	AA8	A	170	187	Right-handed alpha
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	250	255	Right-handed alpha
Helix 12	AB3	A	256	262	Right-handed alpha
Helix 13	AB4	A	277	296	Right-handed alpha
Helix 14	AB5	A	316	327	Right-handed alpha
Helix 15	AB6	A	357	360	Right-handed 310
Helix 16	AB7	A	455	468	Right-handed alpha
Helix 17	AB8	A	498	506	Right-handed alpha
Helix 18	AB9	A	518	523	Right-handed alpha
Helix 19	AC1	A	557	582	Right-handed alpha
Helix 20	AC2	A	592	606	Right-handed alpha
Helix 21	AC3	A	616	646	Right-handed alpha
Helix 22	AC4	A	659	664	Right-handed alpha
Helix 23	AC5	A	677	686	Right-handed alpha
Helix 24	AC6	A	689	698	Right-handed alpha
Helix 25	AC7	A	703	713	Right-handed alpha
Helix 26	AC8	A	723	734	Right-handed alpha
Helix 27	AC9	A	757	772	Right-handed alpha
Helix 28	AD1	A	773	783	Right-handed alpha
Helix 29	AD2	A	794	798	Right-handed 310
Helix 30	AD3	A	799	833	Right-handed alpha
Helix 31	AD4	B	72	85	Right-handed alpha
Helix 32	AD5	B	102	115	Right-handed alpha
Helix 33	AD6	B	122	127	Right-handed alpha
Helix 34	AD7	B	144	159	Right-handed alpha
Helix 35	AD8	B	175	188	Right-handed alpha
Helix 36	AD9	B	209	216	Right-handed alpha
Helix 37	AE1	B	228	243	Right-handed alpha
Helix 38	AE2	B	254	259	Right-handed alpha
Helix 39	AE3	B	283	307	Right-handed alpha
Helix 40	AE4	B	324	326	Right-handed 310
Helix 41	AE5	B	327	335	Right-handed alpha
Helix 42	AE6	B	453	466	Right-handed alpha
Helix 43	AE7	B	489	496	Right-handed alpha
Helix 44	AE8	B	509	516	Right-handed alpha
Helix 45	AE9	B	544	548	Right-handed 310
Helix 46	AF1	B	549	570	Right-handed alpha
Helix 47	AF2	B	586	597	Right-handed alpha
Helix 48	AF3	B	608	639	Right-handed alpha
Helix 49	AF4	B	672	682	Right-handed alpha
Helix 50	AF5	B	682	690	Right-handed alpha
Helix 51	AF6	B	691	693	Right-handed 310
Helix 52	AF7	B	696	706	Right-handed alpha
Helix 53	AF8	B	716	725	Right-handed alpha
Helix 54	AF9	B	756	769	Right-handed alpha
Helix 55	AG1	B	770	780	Right-handed alpha
Helix 56	AG2	B	799	828	Right-handed alpha
Helix 57	AG3	C	35	52	Right-handed alpha
Helix 58	AG4	C	70	81	Right-handed alpha
Helix 59	AG5	C	82	86	Right-handed 310
Helix 60	AG6	C	105	114	Right-handed alpha
Helix 61	AG7	C	125	129	Right-handed 310
Helix 62	AG8	C	146	159	Right-handed alpha
Helix 63	AG9	C	170	187	Right-handed alpha
Helix 64	AH1	C	204	214	Right-handed alpha
Helix 65	AH2	C	224	238	Right-handed alpha
Helix 66	AH3	C	250	255	Right-handed alpha
Helix 67	AH4	C	256	262	Right-handed alpha
Helix 68	AH5	C	276	296	Right-handed alpha
Helix 69	AH6	C	316	327	Right-handed alpha
Helix 70	AH7	C	357	360	Right-handed 310
Helix 71	AH8	C	455	468	Right-handed alpha
Helix 72	AH9	C	518	525	Right-handed alpha
Helix 73	AI1	C	557	582	Right-handed alpha
Helix 74	AI2	C	593	606	Right-handed alpha
Helix 75	AI3	C	616	645	Right-handed alpha
Helix 76	AI4	C	659	664	Right-handed alpha
Helix 77	AI5	C	677	686	Right-handed alpha
Helix 78	AI6	C	689	698	Right-handed alpha
Helix 79	AI7	C	703	714	Right-handed alpha
Helix 80	AI8	C	723	734	Right-handed alpha
Helix 81	AI9	C	757	772	Right-handed alpha
Helix 82	AJ1	C	773	783	Right-handed alpha
Helix 83	AJ2	C	799	826	Right-handed alpha
Helix 84	AJ3	D	44	51	Right-handed alpha
Helix 85	AJ4	D	72	88	Right-handed alpha
Helix 86	AJ5	D	101	115	Right-handed alpha
Helix 87	AJ6	D	122	127	Right-handed alpha
Helix 88	AJ7	D	144	159	Right-handed alpha
Helix 89	AJ8	D	175	188	Right-handed alpha
Helix 90	AJ9	D	209	216	Right-handed alpha
Helix 91	AK1	D	228	243	Right-handed alpha
Helix 92	AK2	D	254	259	Right-handed alpha
Helix 93	AK3	D	283	307	Right-handed alpha
Helix 94	AK4	D	326	335	Right-handed alpha
Helix 95	AK5	D	452	466	Right-handed alpha
Helix 96	AK6	D	489	496	Right-handed alpha
Helix 97	AK7	D	509	516	Right-handed alpha
Helix 98	AK8	D	544	548	Right-handed 310
Helix 99	AK9	D	549	570	Right-handed alpha
Helix 100	AL1	D	584	597	Right-handed alpha
Helix 101	AL2	D	608	638	Right-handed alpha
Helix 102	AL3	D	672	682	Right-handed alpha
Helix 103	AL4	D	682	690	Right-handed alpha
Helix 104	AL5	D	691	693	Right-handed 310
Helix 105	AL6	D	696	706	Right-handed alpha
Helix 106	AL7	D	716	725	Right-handed alpha
Helix 107	AL8	D	756	769	Right-handed alpha
Helix 108	AL9	D	770	780	Right-handed alpha
Helix 109	AM1	D	798	828	Right-handed alpha

There are 27 sheets in PDB entry 4TLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	26	33	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	164	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	249	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	355	anti-parallel
Strand 3	A	362	368	anti-parallel
Strand 4	A	371	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	346	347	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	397	401	parallel
Strand 3	A	510	511	parallel
Strand 4	A	751	752	anti-parallel
Strand 5	A	526	527	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	448	454	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	672	first strand
Strand 2	A	718	722	parallel
Strand 3	A	532	541	anti-parallel
Strand 4	A	736	748	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	68	first strand
Strand 2	B	29	37	parallel
Strand 3	B	91	96	parallel
Strand 4	B	118	120	parallel
Strand 5	B	138	140	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	200	first strand
Strand 2	B	163	169	parallel
Strand 3	B	222	226	parallel
Strand 4	B	250	253	parallel
Strand 5	B	273	276	parallel
Strand 6	B	357	362	anti-parallel
Strand 7	B	368	375	anti-parallel
Strand 8	B	378	381	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	342	343	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	473	first strand
Strand 2	B	399	403	parallel
Strand 3	B	501	502	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	447	452	anti-parallel
Strand 3	B	427	430	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	B	711	715	parallel
Strand 3	B	527	531	anti-parallel
Strand 4	B	732	733	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	26	33	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	164	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	246	249	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	355	anti-parallel
Strand 3	C	362	368	anti-parallel
Strand 4	C	371	374	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	474	first strand
Strand 2	C	397	401	parallel
Strand 3	C	510	511	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	448	454	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	527	first strand
Strand 2	C	751	752	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	722	first strand
Strand 2	C	532	539	anti-parallel
Strand 3	C	739	748	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	68	first strand
Strand 2	D	31	37	parallel
Strand 3	D	91	96	parallel
Strand 4	D	118	120	parallel
Strand 5	D	138	140	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	200	first strand
Strand 2	D	163	169	parallel
Strand 3	D	222	226	parallel
Strand 4	D	250	253	parallel
Strand 5	D	273	276	parallel
Strand 6	D	357	362	anti-parallel
Strand 7	D	368	375	anti-parallel
Strand 8	D	378	381	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	342	343	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	473	first strand
Strand 2	D	400	403	parallel
Strand 3	D	501	502	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	413	first strand
Strand 2	D	447	451	anti-parallel
Strand 3	D	427	430	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	483	first strand
Strand 2	D	486	488	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	666	667	first strand
Strand 2	D	711	715	parallel
Strand 3	D	527	531	anti-parallel
Strand 4	D	732	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TLM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TLM