Analysis of interatomic Contacts of Structural Units in PDB entry:
4TM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TM5 entry

There are 2 chains in PDB entry 4TM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6ILE 164
A
 SER 166GLU 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4TM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
80 95Right-handed alpha
Helix 5
AA5
A
95 100Right-handed alpha
Helix 6
AA6
A
141 148Right-handed alpha
Helix 7
AA7
A
169 182Right-handed alpha
Helix 8
AA8
A
223 237Right-handed alpha
Helix 9
AA9
A
246 252Right-handed alpha
Helix 10
AB1
A
282 301Right-handed alpha
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There are 3 sheets in PDB entry 4TM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
129 136anti-parallel
Strand 4
A
105 112anti-parallel
Strand 5
A
40 50anti-parallel
Strand 6
A
53 56anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
264 271parallel
Strand 5
A
255 260anti-parallel
Strand 6
A
202 207anti-parallel
Strand 7
A
210 213anti-parallel
Strand 8
A
240 242parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
264 271parallel
Strand 5
A
274 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il