Analysis of interatomic Contacts of Structural Units in PDB entry:
4TMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TMB entry

There are 4 chains in PDB entry 4TMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	VAL 392
B	TYR 3	VAL 392
C	MET 1	LYS 397
D	MET 1	ALA 103

There are 79 helices in PDB entry 4TMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	49	61	Right-handed alpha
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	A	90	107	Right-handed alpha
Helix 5	AA5	A	118	122	Right-handed 310
Helix 6	AA6	A	123	130	Right-handed alpha
Helix 7	AA7	A	144	154	Right-handed alpha
Helix 8	AA8	A	162	183	Right-handed alpha
Helix 9	AA9	A	196	203	Right-handed alpha
Helix 10	AB1	A	204	207	Right-handed 310
Helix 11	AB2	A	216	221	Right-handed alpha
Helix 12	AB3	A	221	236	Right-handed alpha
Helix 13	AB4	A	254	258	Right-handed 310
Helix 14	AB5	A	260	278	Right-handed alpha
Helix 15	AB6	A	298	306	Right-handed alpha
Helix 16	AB7	A	309	315	Right-handed 310
Helix 17	AB8	A	329	337	Right-handed alpha
Helix 18	AB9	A	347	353	Right-handed alpha
Helix 19	AC1	A	355	363	Right-handed alpha
Helix 20	AC2	A	370	374	Right-handed 310
Helix 21	AC3	B	14	18	Right-handed 310
Helix 22	AC4	B	49	61	Right-handed alpha
Helix 23	AC5	B	76	80	Right-handed 310
Helix 24	AC6	B	90	107	Right-handed alpha
Helix 25	AC7	B	118	122	Right-handed 310
Helix 26	AC8	B	123	130	Right-handed alpha
Helix 27	AC9	B	144	154	Right-handed alpha
Helix 28	AD1	B	162	183	Right-handed alpha
Helix 29	AD2	B	196	203	Right-handed alpha
Helix 30	AD3	B	204	207	Right-handed 310
Helix 31	AD4	B	216	236	Right-handed alpha
Helix 32	AD5	B	254	258	Right-handed 310
Helix 33	AD6	B	260	278	Right-handed alpha
Helix 34	AD7	B	308	315	Right-handed 310
Helix 35	AD8	B	329	337	Right-handed alpha
Helix 36	AD9	B	347	353	Right-handed alpha
Helix 37	AE1	B	355	363	Right-handed alpha
Helix 38	AE2	B	370	374	Right-handed 310
Helix 39	AE3	B	387	392	Right-handed alpha
Helix 40	AE4	C	14	18	Right-handed 310
Helix 41	AE5	C	52	61	Right-handed alpha
Helix 42	AE6	C	76	80	Right-handed 310
Helix 43	AE7	C	90	107	Right-handed alpha
Helix 44	AE8	C	118	122	Right-handed 310
Helix 45	AE9	C	123	130	Right-handed alpha
Helix 46	AF1	C	144	154	Right-handed alpha
Helix 47	AF2	C	162	183	Right-handed alpha
Helix 48	AF3	C	196	203	Right-handed alpha
Helix 49	AF4	C	204	207	Right-handed 310
Helix 50	AF5	C	216	221	Right-handed alpha
Helix 51	AF6	C	221	236	Right-handed alpha
Helix 52	AF7	C	254	258	Right-handed 310
Helix 53	AF8	C	260	278	Right-handed alpha
Helix 54	AF9	C	308	315	Right-handed 310
Helix 55	AG1	C	329	338	Right-handed alpha
Helix 56	AG2	C	347	353	Right-handed alpha
Helix 57	AG3	C	355	363	Right-handed alpha
Helix 58	AG4	C	370	374	Right-handed 310
Helix 59	AG5	C	387	394	Right-handed alpha
Helix 60	AG6	D	14	18	Right-handed 310
Helix 61	AG7	D	49	61	Right-handed alpha
Helix 62	AG8	D	76	80	Right-handed 310
Helix 63	AG9	D	90	107	Right-handed alpha
Helix 64	AH1	D	118	122	Right-handed 310
Helix 65	AH2	D	123	130	Right-handed alpha
Helix 66	AH3	D	144	154	Right-handed alpha
Helix 67	AH4	D	162	183	Right-handed alpha
Helix 68	AH5	D	196	203	Right-handed alpha
Helix 69	AH6	D	204	207	Right-handed 310
Helix 70	AH7	D	216	221	Right-handed alpha
Helix 71	AH8	D	221	236	Right-handed alpha
Helix 72	AH9	D	254	258	Right-handed 310
Helix 73	AI1	D	260	278	Right-handed alpha
Helix 74	AI2	D	308	315	Right-handed 310
Helix 75	AI3	D	329	337	Right-handed alpha
Helix 76	AI4	D	347	353	Right-handed alpha
Helix 77	AI5	D	355	363	Right-handed alpha
Helix 78	AI6	D	370	374	Right-handed 310
Helix 79	AI7	D	387	394	Right-handed alpha

There are 12 sheets in PDB entry 4TMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	25	27	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	342	345	parallel
Strand 3	A	320	323	parallel
Strand 4	A	284	288	parallel
Strand 5	A	240	244	parallel
Strand 6	A	187	191	parallel
Strand 7	A	110	115	parallel
Strand 8	A	67	69	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	158	160	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	25	27	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	67	73	parallel
Strand 3	B	110	115	parallel
Strand 4	B	187	191	parallel
Strand 5	B	240	244	parallel
Strand 6	B	284	288	parallel
Strand 7	B	320	323	parallel
Strand 8	B	342	345	parallel
Strand 9	B	31	33	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	158	160	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	25	27	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	342	345	parallel
Strand 3	C	320	323	parallel
Strand 4	C	284	288	parallel
Strand 5	C	240	244	parallel
Strand 6	C	187	191	parallel
Strand 7	C	110	115	parallel
Strand 8	C	67	69	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	158	160	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	25	27	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	67	69	parallel
Strand 3	D	110	115	parallel
Strand 4	D	187	191	parallel
Strand 5	D	240	244	parallel
Strand 6	D	284	288	parallel
Strand 7	D	320	323	parallel
Strand 8	D	342	345	parallel
Strand 9	D	31	33	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	158	160	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TMB