Analysis of interatomic Contacts of Structural Units in PDB entry:
4TMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TMV entry

There are 2 chains in PDB entry 4TMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 514ASP 858
A
 LYS 518GLU 856
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4TMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
535 545Right-handed alpha
Helix 2
AA2
B
547 552Right-handed alpha
Helix 3
AA3
B
553 556Right-handed 310
Helix 4
AA4
B
567 574Right-handed alpha
Helix 5
AA5
B
575 578Right-handed 310
Helix 6
AA6
B
598 600Right-handed 310
Helix 7
AA7
B
601 612Right-handed alpha
Helix 8
AA8
B
626 639Right-handed alpha
Helix 9
AA9
B
649 653Right-handed 310
Helix 10
AB1
B
663 669Right-handed alpha
Helix 11
AB2
B
672 693Right-handed alpha
Helix 12
AB3
B
701 703Right-handed 310
Helix 13
AB4
B
722 737Right-handed alpha
Helix 14
AB5
B
739 744Right-handed 310
Helix 15
AB6
B
847 858Right-handed alpha
Helix 16
AB7
A
535 545Right-handed alpha
Helix 17
AB8
A
547 552Right-handed alpha
Helix 18
AB9
A
553 556Right-handed 310
Helix 19
AC1
A
567 574Right-handed alpha
Helix 20
AC2
A
575 578Right-handed 310
Helix 21
AC3
A
598 600Right-handed 310
Helix 22
AC4
A
601 612Right-handed alpha
Helix 23
AC5
A
626 640Right-handed alpha
Helix 24
AC6
A
649 653Right-handed 310
Helix 25
AC7
A
663 670Right-handed alpha
Helix 26
AC8
A
672 693Right-handed alpha
Helix 27
AC9
A
701 703Right-handed 310
Helix 28
AD1
A
722 737Right-handed alpha
Helix 29
AD2
A
739 744Right-handed 310
Helix 30
AD3
A
847 856Right-handed alpha
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There are 7 sheets in PDB entry 4TMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 566first strand
Strand 2
B
589 594anti-parallel
Strand 3
B
525 530parallel
Strand 4
B
614 620parallel
Strand 5
B
643 648parallel
Strand 6
B
710 714parallel
Strand 7
B
697 699parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
789 792first strand
Strand 2
B
779 782anti-parallel
Strand 3
B
838 841anti-parallel
Strand 4
B
749 758anti-parallel
Strand 5
B
762 771anti-parallel
Strand 6
B
821 826anti-parallel
Strand 7
B
795 799anti-parallel
Strand 8
B
811 813anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
773 775first strand
Strand 2
B
816 818anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 566first strand
Strand 2
A
589 594anti-parallel
Strand 3
A
525 530parallel
Strand 4
A
614 620parallel
Strand 5
A
643 648parallel
Strand 6
A
710 714parallel
Strand 7
A
697 699parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 758first strand
Strand 2
A
762 771anti-parallel
Strand 3
A
821 826anti-parallel
Strand 4
A
795 798anti-parallel
Strand 5
A
812 813anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 775first strand
Strand 2
A
816 818anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 792first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
839 841anti-parallel
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