Analysis of interatomic Contacts of Structural Units in PDB entry:
4TPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TPT entry

There are 2 chains in PDB entry 4TPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 330GLY 631
B
 ASP 330LEU 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4TPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
366 376Right-handed alpha
Helix 2
AA2
A
376 383Right-handed alpha
Helix 3
AA3
A
413 418Right-handed alpha
Helix 4
AA4
A
424 445Right-handed alpha
Helix 5
AA5
A
514 519Right-handed alpha
Helix 6
AA6
A
526 542Right-handed alpha
Helix 7
AA7
A
559 568Right-handed alpha
Helix 8
AA8
A
575 584Right-handed alpha
Helix 9
AA9
A
587 591Right-handed 310
Helix 10
AB1
A
593 609Right-handed alpha
Helix 11
AB2
A
616 631Right-handed alpha
Helix 12
AB3
B
366 376Right-handed alpha
Helix 13
AB4
B
376 383Right-handed alpha
Helix 14
AB5
B
413 419Right-handed alpha
Helix 15
AB6
B
424 445Right-handed alpha
Helix 16
AB7
B
514 519Right-handed alpha
Helix 17
AB8
B
525 542Right-handed alpha
Helix 18
AB9
B
559 568Right-handed alpha
Helix 19
AC1
B
575 584Right-handed alpha
Helix 20
AC2
B
587 591Right-handed 310
Helix 21
AC3
B
593 609Right-handed alpha
Helix 22
AC4
B
616 629Right-handed alpha
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There are 6 sheets in PDB entry 4TPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 337first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
356 361anti-parallel
Strand 4
B
401 406anti-parallel
Strand 5
B
391 396anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 396first strand
Strand 2
A
401 406anti-parallel
Strand 3
A
356 361anti-parallel
Strand 4
A
345 350anti-parallel
Strand 5
B
331 337anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
457 460anti-parallel
Strand 3
A
465 467anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
475 476anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 412first strand
Strand 2
B
457 460anti-parallel
Strand 3
B
465 467anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 448first strand
Strand 2
B
475 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il