Analysis of interatomic Contacts of Structural Units in PDB entry:
4TPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TPV entry

There are 2 chains in PDB entry 4TPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3HIS 184
B
 TYR 4GLY 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4TPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 37Right-handed alpha
Helix 2
AA2
A
47 59Right-handed alpha
Helix 3
AA3
A
81 92Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
108 116Right-handed alpha
Helix 6
AA6
A
159 164Right-handed 310
Helix 7
AA7
A
171 174Right-handed 310
Helix 8
AA8
B
14 37Right-handed alpha
Helix 9
AA9
B
47 59Right-handed alpha
Helix 10
AB1
B
81 92Right-handed alpha
Helix 11
AB2
B
93 97Right-handed 310
Helix 12
AB3
B
108 116Right-handed alpha
Helix 13
AB4
B
159 164Right-handed 310
Helix 14
AB5
B
171 174Right-handed 310
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There are 4 sheets in PDB entry 4TPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
121 129parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
70 75anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
178 179anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
121 129parallel
Strand 3
B
132 140anti-parallel
Strand 4
B
70 75anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
178 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il