Analysis of interatomic Contacts of Structural Units in PDB entry:
4TRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TRH entry

There are 2 chains in PDB entry 4TRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8LEU 516
B
 VAL 8LYS 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 4TRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 48Right-handed 310
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
68 90Right-handed alpha
Helix 4
AA4
A
98 126Right-handed alpha
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
144 154Right-handed alpha
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
201 211Right-handed alpha
Helix 9
AA9
A
224 235Right-handed alpha
Helix 10
AB1
A
247 269Right-handed alpha
Helix 11
AB2
A
271 277Right-handed 310
Helix 12
AB3
A
289 295Right-handed alpha
Helix 13
AB4
A
305 318Right-handed alpha
Helix 14
AB5
A
319 324Right-handed 310
Helix 15
AB6
A
340 365Right-handed alpha
Helix 16
AB7
A
371 378Right-handed alpha
Helix 17
AB8
A
380 395Right-handed alpha
Helix 18
AB9
A
398 410Right-handed alpha
Helix 19
AC1
A
421 440Right-handed alpha
Helix 20
AC2
A
470 478Right-handed alpha
Helix 21
AC3
A
484 488Right-handed 310
Helix 22
AC4
A
489 496Right-handed alpha
Helix 23
AC5
A
506 510Right-handed 310
Helix 24
AC6
B
44 48Right-handed 310
Helix 25
AC7
B
49 58Right-handed alpha
Helix 26
AC8
B
68 91Right-handed alpha
Helix 27
AC9
B
98 125Right-handed alpha
Helix 28
AD1
B
133 138Right-handed alpha
Helix 29
AD2
B
144 153Right-handed alpha
Helix 30
AD3
B
185 189Right-handed 310
Helix 31
AD4
B
201 211Right-handed alpha
Helix 32
AD5
B
224 235Right-handed alpha
Helix 33
AD6
B
247 269Right-handed alpha
Helix 34
AD7
B
271 277Right-handed 310
Helix 35
AD8
B
289 295Right-handed alpha
Helix 36
AD9
B
305 318Right-handed alpha
Helix 37
AE1
B
319 324Right-handed 310
Helix 38
AE2
B
340 365Right-handed alpha
Helix 39
AE3
B
371 377Right-handed alpha
Helix 40
AE4
B
380 395Right-handed alpha
Helix 41
AE5
B
398 410Right-handed alpha
Helix 42
AE6
B
421 440Right-handed alpha
Helix 43
AE7
B
470 479Right-handed alpha
Helix 44
AE8
B
484 488Right-handed 310
Helix 45
AE9
B
489 496Right-handed alpha
Helix 46
AF1
B
506 511Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4TRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
28 36anti-parallel
Strand 3
A
465 469anti-parallel
Strand 4
A
459 462anti-parallel
Strand 5
A
501 502parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
447 451anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
337 338anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
28 36anti-parallel
Strand 3
B
465 469anti-parallel
Strand 4
B
459 462anti-parallel
Strand 5
B
501 502parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 161first strand
Strand 2
B
447 451anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
337 338anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il