Analysis of interatomic Contacts of Structural Units in PDB entry:
4TSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TSE entry

There are 2 chains in PDB entry 4TSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASN 409
B
 GLY 1ASN 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4TSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
257 266Right-handed alpha
Helix 2
AA2
A
272 274Right-handed 310
Helix 3
AA3
A
275 281Right-handed alpha
Helix 4
AA4
A
307 311Right-handed 310
Helix 5
AA5
A
344 353Right-handed alpha
Helix 6
AA6
A
359 366Right-handed 310
Helix 7
AA7
A
393 395Right-handed 310
Helix 8
AA8
B
257 265Right-handed alpha
Helix 9
AA9
B
272 274Right-handed 310
Helix 10
AB1
B
275 281Right-handed alpha
Helix 11
AB2
B
307 311Right-handed 310
Helix 12
AB3
B
344 353Right-handed alpha
Helix 13
AB4
B
359 366Right-handed 310
Helix 14
AB5
B
393 395Right-handed 310
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There are 4 sheets in PDB entry 4TSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 306first strand
Strand 2
A
294 297anti-parallel
Strand 3
A
283 288anti-parallel
Strand 4
A
251 253anti-parallel
Strand 5
A
312 313anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
369 375anti-parallel
Strand 4
A
338 341anti-parallel
Strand 5
A
397 399anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 306first strand
Strand 2
B
294 297anti-parallel
Strand 3
B
283 288anti-parallel
Strand 4
B
251 253anti-parallel
Strand 5
B
312 313anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 392first strand
Strand 2
B
381 385anti-parallel
Strand 3
B
369 375anti-parallel
Strand 4
B
338 341anti-parallel
Strand 5
B
397 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il