Analysis of interatomic Contacts of Structural Units in PDB entry:
4TUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TUU entry

There is 1 chain in PDB entry 4TUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 107ALA 1046
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4TUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 122Right-handed alpha
Helix 2
AA2
A
125 130Right-handed alpha
Helix 3
AA3
A
133 143Right-handed alpha
Helix 4
AA4
A
143 157Right-handed alpha
Helix 5
AA5
A
159 167Right-handed alpha
Helix 6
AA6
A
178 183Right-handed alpha
Helix 7
AA7
A
184 187Right-handed 310
Helix 8
AA8
A
216 231Right-handed alpha
Helix 9
AA9
A
266 269Right-handed 310
Helix 10
AB1
A
270 280Right-handed alpha
Helix 11
AB2
A
290 295Right-handed alpha
Helix 12
AB3
A
394 396Right-handed 310
Helix 13
AB4
A
488 505Right-handed alpha
Helix 14
AB5
A
524 536Right-handed alpha
Helix 15
AB6
A
544 554Right-handed alpha
Helix 16
AB7
A
554 559Right-handed alpha
Helix 17
AB8
A
560 563Right-handed 310
Helix 18
AB9
A
564 572Right-handed alpha
Helix 19
AC1
A
576 589Right-handed alpha
Helix 20
AC2
A
594 599Right-handed alpha
Helix 21
AC3
A
600 603Right-handed 310
Helix 22
AC4
A
608 623Right-handed alpha
Helix 23
AC5
A
624 631Right-handed alpha
Helix 24
AC6
A
631 638Right-handed alpha
Helix 25
AC7
A
639 642Right-handed 310
Helix 26
AC8
A
647 658Right-handed alpha
Helix 27
AC9
A
660 673Right-handed alpha
Helix 28
AD1
A
680 693Right-handed alpha
Helix 29
AD2
A
697 721Right-handed alpha
Helix 30
AD3
A
727 740Right-handed alpha
Helix 31
AD4
A
741 748Right-handed alpha
Helix 32
AD5
A
789 793Right-handed 310
Helix 33
AD6
A
807 827Right-handed alpha
Helix 34
AD7
A
857 863Right-handed alpha
Helix 35
AD8
A
875 885Right-handed alpha
Helix 36
AD9
A
888 912Right-handed alpha
Helix 37
AE1
A
957 965Right-handed alpha
Helix 38
AE2
A
974 993Right-handed alpha
Helix 39
AE3
A
994 1005Right-handed alpha
Helix 40
AE4
A
1015 1020Right-handed alpha
Helix 41
AE5
A
1020 1026Right-handed alpha
Helix 42
AE6
A
1031 1045Right-handed alpha
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There are 7 sheets in PDB entry 4TUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 212first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 342anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
376 377anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
400 409anti-parallel
Strand 4
A
420 428anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
756 761anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il