Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TVA entry

There are 2 chains in PDB entry 4TVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 85	LEU 350
B	MET 1	PRO 785

There are 37 helices in PDB entry 4TVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	101	116	Right-handed alpha
Helix 2	AA2	A	130	134	Right-handed alpha
Helix 3	AA3	A	135	138	Right-handed 310
Helix 4	AA4	A	143	149	Right-handed 310
Helix 5	AA5	A	180	190	Right-handed alpha
Helix 6	AA6	A	229	246	Right-handed alpha
Helix 7	AA7	A	287	300	Right-handed alpha
Helix 8	AA8	A	319	328	Right-handed alpha
Helix 9	AA9	A	333	338	Right-handed alpha
Helix 10	AB1	A	339	344	Right-handed alpha
Helix 11	AB2	A	345	347	Right-handed 310
Helix 12	AB3	B	5	9	Right-handed alpha
Helix 13	AB4	B	17	29	Right-handed alpha
Helix 14	AB5	B	119	124	Right-handed alpha
Helix 15	AB6	B	145	150	Right-handed 310
Helix 16	AB7	B	164	168	Right-handed 310
Helix 17	AB8	B	169	180	Right-handed alpha
Helix 18	AB9	B	227	237	Right-handed alpha
Helix 19	AC1	B	243	257	Right-handed alpha
Helix 20	AC2	B	266	268	Right-handed 310
Helix 21	AC3	B	339	350	Right-handed alpha
Helix 22	AC4	B	354	363	Right-handed alpha
Helix 23	AC5	B	368	385	Right-handed alpha
Helix 24	AC6	B	407	416	Right-handed alpha
Helix 25	AC7	B	420	431	Right-handed alpha
Helix 26	AC8	B	455	468	Right-handed alpha
Helix 27	AC9	B	469	472	Right-handed 310
Helix 28	AD1	B	482	486	Right-handed 310
Helix 29	AD2	B	489	506	Right-handed alpha
Helix 30	AD3	B	519	524	Right-handed alpha
Helix 31	AD4	B	538	542	Right-handed 310
Helix 32	AD5	B	548	563	Right-handed alpha
Helix 33	AD6	B	604	621	Right-handed alpha
Helix 34	AD7	B	656	663	Right-handed alpha
Helix 35	AD8	B	706	719	Right-handed alpha
Helix 36	AD9	B	757	765	Right-handed alpha
Helix 37	AE1	B	765	770	Right-handed alpha

There are 15 sheets in PDB entry 4TVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	194	203	parallel
Strand 3	A	215	225	anti-parallel
Strand 4	A	311	318	anti-parallel
Strand 5	A	276	286	anti-parallel
Strand 6	A	261	271	anti-parallel
Strand 7	A	251	254	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	173	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	B	532	533	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	154	158	anti-parallel
Strand 3	B	32	37	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	62	67	anti-parallel
Strand 3	B	45	55	anti-parallel
Strand 4	B	86	90	anti-parallel
Strand 5	B	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	111	114	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	204	first strand
Strand 2	B	271	276	parallel
Strand 3	B	298	304	anti-parallel
Strand 4	B	307	313	anti-parallel
Strand 5	B	317	318	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	264	first strand
Strand 2	B	331	337	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	387	388	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	264	first strand
Strand 2	B	331	337	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	393	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	290	292	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	442	445	anti-parallel
Strand 3	B	434	436	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	567	577	parallel
Strand 3	B	581	591	anti-parallel
Strand 4	B	669	675	anti-parallel
Strand 5	B	648	655	anti-parallel
Strand 6	B	634	644	anti-parallel
Strand 7	B	624	628	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	543	544	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	697	first strand
Strand 2	B	740	749	anti-parallel
Strand 3	B	700	702	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	697	first strand
Strand 2	B	740	749	anti-parallel
Strand 3	B	722	730	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVA