Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TVF entry

There is 1 chain in PDB entry 4TVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6TRP 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4TVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
19 24Right-handed alpha
Helix 3
AA3
A
47 57Right-handed alpha
Helix 4
AA4
A
87 91Right-handed 310
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
105 107Right-handed 310
Helix 7
AA7
A
108 114Right-handed alpha
Helix 8
AA8
A
115 134Right-handed alpha
Helix 9
AA9
A
139 143Right-handed alpha
Helix 10
AB1
A
146 157Right-handed alpha
Helix 11
AB2
A
159 173Right-handed alpha
Helix 12
AB3
A
190 204Right-handed alpha
Helix 13
AB4
A
208 218Right-handed alpha
Helix 14
AB5
A
222 237Right-handed alpha
Helix 15
AB6
A
238 255Right-handed alpha
Helix 16
AB7
A
256 264Right-handed 310
Helix 17
AB8
A
265 281Right-handed alpha
Helix 18
AB9
A
311 317Right-handed alpha
Helix 19
AC1
A
349 368Right-handed alpha
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There are 5 sheets in PDB entry 4TVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
17 18anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
43 45anti-parallel
Strand 3
A
307 310parallel
Strand 4
A
289 291anti-parallel
Strand 5
A
61 62anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
390 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il