Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TVJ entry

There are 2 chains in PDB entry 4TVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 223PHE 579
B
 THR 226PHE 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 4TVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
223 232Right-handed alpha
Helix 2
AA2
A
235 246Right-handed alpha
Helix 3
AA3
A
247 258Right-handed alpha
Helix 4
AA4
A
266 270Right-handed 310
Helix 5
AA5
A
271 291Right-handed alpha
Helix 6
AA6
A
295 309Right-handed alpha
Helix 7
AA7
A
323 347Right-handed alpha
Helix 8
AA8
A
356 366Right-handed alpha
Helix 9
AA9
A
376 389Right-handed alpha
Helix 10
AB1
A
411 416Right-handed alpha
Helix 11
AB2
A
431 433Right-handed 310
Helix 12
AB3
A
434 442Right-handed alpha
Helix 13
AB4
A
451 455Right-handed 310
Helix 14
AB5
A
466 472Right-handed alpha
Helix 15
AB6
A
473 475Right-handed 310
Helix 16
AB7
A
504 509Right-handed 310
Helix 17
AB8
A
525 528Right-handed 310
Helix 18
AB9
A
563 565Right-handed 310
Helix 19
AC1
B
227 232Right-handed alpha
Helix 20
AC2
B
235 246Right-handed alpha
Helix 21
AC3
B
247 258Right-handed alpha
Helix 22
AC4
B
266 270Right-handed 310
Helix 23
AC5
B
271 292Right-handed alpha
Helix 24
AC6
B
295 309Right-handed alpha
Helix 25
AC7
B
323 347Right-handed alpha
Helix 26
AC8
B
356 366Right-handed alpha
Helix 27
AC9
B
376 389Right-handed alpha
Helix 28
AD1
B
411 416Right-handed alpha
Helix 29
AD2
B
431 433Right-handed 310
Helix 30
AD3
B
434 442Right-handed alpha
Helix 31
AD4
B
451 455Right-handed 310
Helix 32
AD5
B
466 473Right-handed alpha
Helix 33
AD6
B
504 509Right-handed 310
Helix 34
AD7
B
525 528Right-handed 310
Helix 35
AD8
B
563 565Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 4TVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 371first strand
Strand 2
A
398 409anti-parallel
Strand 3
A
567 578anti-parallel
Strand 4
A
482 491anti-parallel
Strand 5
A
423 429anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
558 561anti-parallel
Strand 3
A
514 517anti-parallel
Strand 4
A
495 498parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
519 523anti-parallel
Strand 3
A
554 556parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
534 536anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 371first strand
Strand 2
B
398 409anti-parallel
Strand 3
B
567 578anti-parallel
Strand 4
B
482 491anti-parallel
Strand 5
B
423 429anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
558 561anti-parallel
Strand 3
B
514 517anti-parallel
Strand 4
B
495 498parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
519 523anti-parallel
Strand 3
B
554 556parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 531first strand
Strand 2
B
534 536anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il