Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TVM entry

There is 1 chain in PDB entry 4TVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ILE 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4TVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 50Right-handed 310
Helix 2
AA2
A
76 83Right-handed alpha
Helix 3
AA3
A
84 95Right-handed alpha
Helix 4
AA4
A
99 112Right-handed alpha
Helix 5
AA5
A
117 123Right-handed alpha
Helix 6
AA6
A
124 127Right-handed 310
Helix 7
AA7
A
132 148Right-handed alpha
Helix 8
AA8
A
149 152Right-handed 310
Helix 9
AA9
A
158 183Right-handed alpha
Helix 10
AB1
A
195 206Right-handed alpha
Helix 11
AB2
A
215 230Right-handed alpha
Helix 12
AB3
A
235 247Right-handed alpha
Helix 13
AB4
A
250 263Right-handed alpha
Helix 14
AB5
A
269 282Right-handed alpha
Helix 15
AB6
A
316 330Right-handed alpha
Helix 16
AB7
A
338 349Right-handed alpha
Helix 17
AB8
A
366 376Right-handed alpha
Helix 18
AB9
A
379 381Right-handed 310
Helix 19
AC1
A
382 404Right-handed alpha
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There are 3 sheets in PDB entry 4TVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
17 19anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
30 31anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
74 75anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il