Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TVO entry

There are 2 chains in PDB entry 4TVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ALA 331
B
 SER 5ILE 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4TVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
48 61Right-handed alpha
Helix 4
AA4
A
75 80Right-handed alpha
Helix 5
AA5
A
99 102Right-handed 310
Helix 6
AA6
A
103 122Right-handed alpha
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
150 152Right-handed 310
Helix 9
AA9
A
158 174Right-handed alpha
Helix 10
AB1
A
176 178Right-handed 310
Helix 11
AB2
A
207 212Right-handed alpha
Helix 12
AB3
A
213 220Right-handed alpha
Helix 13
AB4
A
220 227Right-handed alpha
Helix 14
AB5
A
227 237Right-handed alpha
Helix 15
AB6
A
241 258Right-handed alpha
Helix 16
AB7
A
273 277Right-handed 310
Helix 17
AB8
A
303 327Right-handed alpha
Helix 18
AB9
B
16 29Right-handed alpha
Helix 19
AC1
B
45 47Right-handed 310
Helix 20
AC2
B
48 62Right-handed alpha
Helix 21
AC3
B
75 80Right-handed alpha
Helix 22
AC4
B
104 122Right-handed alpha
Helix 23
AC5
B
134 145Right-handed alpha
Helix 24
AC6
B
150 152Right-handed 310
Helix 25
AC7
B
158 174Right-handed alpha
Helix 26
AC8
B
176 178Right-handed 310
Helix 27
AC9
B
207 212Right-handed alpha
Helix 28
AD1
B
213 220Right-handed alpha
Helix 29
AD2
B
220 227Right-handed alpha
Helix 30
AD3
B
227 237Right-handed alpha
Helix 31
AD4
B
240 258Right-handed alpha
Helix 32
AD5
B
273 277Right-handed 310
Helix 33
AD6
B
303 327Right-handed alpha
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There are 8 sheets in PDB entry 4TVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
38 43parallel
Strand 3
A
7 11parallel
Strand 4
A
85 88parallel
Strand 5
A
127 130parallel
Strand 6
A
154 156parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
201 202anti-parallel
Strand 3
A
205 206anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
194 196anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
282 290anti-parallel
Strand 3
A
293 296anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 73first strand
Strand 2
B
38 43parallel
Strand 3
B
7 11parallel
Strand 4
B
85 88parallel
Strand 5
B
127 130parallel
Strand 6
B
154 156parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
201 202anti-parallel
Strand 3
B
205 206anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
194 196anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 270first strand
Strand 2
B
282 290anti-parallel
Strand 3
B
293 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il