Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TVS entry

There are 4 chains in PDB entry 4TVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 360LEU 583
B
 THR 362LEU 583
a
 MET 1SER 128
b
 MET 1SER 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4TVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
362 379Right-handed alpha
Helix 2
AA2
A
383 399Right-handed alpha
Helix 3
AA3
A
415 417Right-handed 310
Helix 4
AA4
A
418 435Right-handed alpha
Helix 5
AA5
A
436 438Right-handed 310
Helix 6
AA6
A
447 449Right-handed 310
Helix 7
AA7
A
453 471Right-handed alpha
Helix 8
AA8
A
480 484Right-handed 310
Helix 9
AA9
A
485 489Right-handed 310
Helix 10
AB1
A
490 497Right-handed alpha
Helix 11
AB2
A
524 543Right-handed alpha
Helix 12
AB3
A
553 565Right-handed alpha
Helix 13
AB4
A
574 578Right-handed 310
Helix 14
AB5
B
363 379Right-handed alpha
Helix 15
AB6
B
383 400Right-handed alpha
Helix 16
AB7
B
415 417Right-handed 310
Helix 17
AB8
B
418 435Right-handed alpha
Helix 18
AB9
B
436 438Right-handed 310
Helix 19
AC1
B
447 449Right-handed 310
Helix 20
AC2
B
453 471Right-handed alpha
Helix 21
AC3
B
480 484Right-handed 310
Helix 22
AC4
B
485 489Right-handed 310
Helix 23
AC5
B
490 497Right-handed alpha
Helix 24
AC6
B
524 540Right-handed alpha
Helix 25
AC7
B
553 565Right-handed alpha
Helix 26
AC8
a
29 31Right-handed 310
Helix 27
AC9
a
63 66Right-handed 310
Helix 28
AD1
a
75 77Right-handed 310
Helix 29
AD2
a
88 92Right-handed 310
Helix 30
AD3
a
111 115Right-handed 310
Helix 31
AD4
b
29 31Right-handed 310
Helix 32
AD5
b
88 92Right-handed 310
Helix 33
AD6
b
111 115Right-handed 310
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There are 8 sheets in PDB entry 4TVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 445first strand
Strand 2
A
475 479parallel
Strand 3
A
507 513parallel
Strand 4
A
408 414parallel
Strand 5
A
568 570parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 445first strand
Strand 2
B
475 479parallel
Strand 3
B
507 513parallel
Strand 4
B
408 414parallel
Strand 5
B
568 570parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
4 8first strand
Strand 2
a
19 26anti-parallel
Strand 3
a
79 84anti-parallel
Strand 4
a
69 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
11 14first strand
Strand 2
a
122 127parallel
Strand 3
a
93 101anti-parallel
Strand 4
a
33 40anti-parallel
Strand 5
a
47 52anti-parallel
Strand 6
a
59 61anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
11 14first strand
Strand 2
a
122 127parallel
Strand 3
a
93 101anti-parallel
Strand 4
a
117 118anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
4 8first strand
Strand 2
b
19 26anti-parallel
Strand 3
b
79 84anti-parallel
Strand 4
b
69 74anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
12 14first strand
Strand 2
b
122 127parallel
Strand 3
b
93 101anti-parallel
Strand 4
b
33 40anti-parallel
Strand 5
b
47 52anti-parallel
Strand 6
b
59 61anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
12 14first strand
Strand 2
b
122 127parallel
Strand 3
b
93 101anti-parallel
Strand 4
b
117 118anti-parallel
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