Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TVV entry

There are 3 chains in PDB entry 4TVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	TRP 314
B	ILE 27	TRP 314
C	ILE 27	THR 67

There are 47 helices in PDB entry 4TVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	81	96	Right-handed alpha
Helix 3	AA3	A	125	129	Right-handed 310
Helix 4	AA4	A	135	152	Right-handed alpha
Helix 5	AA5	A	162	167	Right-handed alpha
Helix 6	AA6	A	183	191	Right-handed alpha
Helix 7	AA7	A	207	220	Right-handed alpha
Helix 8	AA8	A	235	251	Right-handed alpha
Helix 9	AA9	A	255	264	Right-handed alpha
Helix 10	AB1	A	279	281	Right-handed 310
Helix 11	AB2	A	282	306	Right-handed alpha
Helix 12	AB3	B	57	62	Right-handed alpha
Helix 13	AB4	B	68	72	Right-handed 310
Helix 14	AB5	B	81	97	Right-handed alpha
Helix 15	AB6	B	125	129	Right-handed 310
Helix 16	AB7	B	135	152	Right-handed alpha
Helix 17	AB8	B	162	167	Right-handed alpha
Helix 18	AB9	B	169	173	Right-handed 310
Helix 19	AC1	B	183	191	Right-handed alpha
Helix 20	AC2	B	207	220	Right-handed alpha
Helix 21	AC3	B	235	251	Right-handed alpha
Helix 22	AC4	B	255	264	Right-handed alpha
Helix 23	AC5	B	279	281	Right-handed 310
Helix 24	AC6	B	282	305	Right-handed alpha
Helix 25	AC7	C	56	61	Right-handed 310
Helix 26	AC8	C	81	96	Right-handed alpha
Helix 27	AC9	C	125	129	Right-handed 310
Helix 28	AD1	C	135	152	Right-handed alpha
Helix 29	AD2	C	162	167	Right-handed alpha
Helix 30	AD3	C	183	191	Right-handed alpha
Helix 31	AD4	C	207	220	Right-handed alpha
Helix 32	AD5	C	235	251	Right-handed alpha
Helix 33	AD6	C	255	264	Right-handed alpha
Helix 34	AD7	C	279	281	Right-handed 310
Helix 35	AD8	C	282	305	Right-handed alpha
Helix 36	AD9	D	57	62	Right-handed alpha
Helix 37	AE1	D	81	97	Right-handed alpha
Helix 38	AE2	D	125	129	Right-handed 310
Helix 39	AE3	D	135	152	Right-handed alpha
Helix 40	AE4	D	162	167	Right-handed alpha
Helix 41	AE5	D	169	173	Right-handed 310
Helix 42	AE6	D	183	191	Right-handed alpha
Helix 43	AE7	D	207	220	Right-handed alpha
Helix 44	AE8	D	235	251	Right-handed alpha
Helix 45	AE9	D	255	264	Right-handed alpha
Helix 46	AF1	D	279	281	Right-handed 310
Helix 47	AF2	D	282	305	Right-handed alpha

There are 8 sheets in PDB entry 4TVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	37	40	parallel
Strand 4	A	119	124	anti-parallel
Strand 5	A	113	116	anti-parallel
Strand 6	A	181	182	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	74	77	anti-parallel
Strand 3	A	226	230	parallel
Strand 4	A	103	109	parallel
Strand 5	A	194	200	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	177	first strand
Strand 2	B	155	161	anti-parallel
Strand 3	B	37	40	parallel
Strand 4	B	119	124	anti-parallel
Strand 5	B	113	116	anti-parallel
Strand 6	B	181	182	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	74	77	anti-parallel
Strand 3	B	226	230	parallel
Strand 4	B	103	109	parallel
Strand 5	B	194	200	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	155	161	anti-parallel
Strand 3	C	37	40	parallel
Strand 4	C	119	124	anti-parallel
Strand 5	C	113	116	anti-parallel
Strand 6	C	181	182	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	74	77	anti-parallel
Strand 3	C	226	230	parallel
Strand 4	C	103	109	parallel
Strand 5	C	194	200	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	177	first strand
Strand 2	D	155	161	anti-parallel
Strand 3	D	37	40	parallel
Strand 4	D	119	124	anti-parallel
Strand 5	D	113	116	anti-parallel
Strand 6	D	181	182	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	74	77	anti-parallel
Strand 3	D	226	230	parallel
Strand 4	D	103	109	parallel
Strand 5	D	194	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TVV