Analysis of interatomic Contacts of Structural Units in PDB entry:
4TY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4TY8 entry

There are 4 chains in PDB entry 4TY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	HIS 562
B	SER 1	HIS 562
C	SER 1	HIS 562
D	SER 1	HIS 562

There are108 helices in PDB entry 4TY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	35	Right-handed 310
Helix 2	AA2	A	41	43	Right-handed 310
Helix 3	AA3	A	44	53	Right-handed alpha
Helix 4	AA4	A	61	76	Right-handed alpha
Helix 5	AA5	A	84	91	Right-handed alpha
Helix 6	AA6	A	104	110	Right-handed alpha
Helix 7	AA7	A	112	129	Right-handed alpha
Helix 8	AA8	A	164	188	Right-handed alpha
Helix 9	AA9	A	189	195	Right-handed 310
Helix 10	AB1	A	196	210	Right-handed alpha
Helix 11	AB2	A	223	228	Right-handed alpha
Helix 12	AB3	A	229	242	Right-handed alpha
Helix 13	AB4	A	246	260	Right-handed alpha
Helix 14	AB5	A	286	306	Right-handed alpha
Helix 15	AB6	A	328	346	Right-handed alpha
Helix 16	AB7	A	359	363	Right-handed 310
Helix 17	AB8	A	388	401	Right-handed alpha
Helix 18	AB9	A	406	415	Right-handed alpha
Helix 19	AC1	A	418	424	Right-handed alpha
Helix 20	AC2	A	424	436	Right-handed alpha
Helix 21	AC3	A	455	457	Right-handed 310
Helix 22	AC4	A	458	467	Right-handed alpha
Helix 23	AC5	A	468	473	Right-handed 310
Helix 24	AC6	A	478	493	Right-handed alpha
Helix 25	AC7	A	496	513	Right-handed alpha
Helix 26	AC8	A	515	526	Right-handed alpha
Helix 27	AC9	A	527	530	Right-handed 310
Helix 28	AD1	B	33	35	Right-handed 310
Helix 29	AD2	B	41	43	Right-handed 310
Helix 30	AD3	B	44	53	Right-handed alpha
Helix 31	AD4	B	61	76	Right-handed alpha
Helix 32	AD5	B	84	91	Right-handed alpha
Helix 33	AD6	B	104	110	Right-handed alpha
Helix 34	AD7	B	112	129	Right-handed alpha
Helix 35	AD8	B	164	188	Right-handed alpha
Helix 36	AD9	B	189	195	Right-handed 310
Helix 37	AE1	B	196	211	Right-handed alpha
Helix 38	AE2	B	223	228	Right-handed alpha
Helix 39	AE3	B	229	243	Right-handed alpha
Helix 40	AE4	B	246	260	Right-handed alpha
Helix 41	AE5	B	286	307	Right-handed alpha
Helix 42	AE6	B	328	346	Right-handed alpha
Helix 43	AE7	B	359	363	Right-handed 310
Helix 44	AE8	B	388	401	Right-handed alpha
Helix 45	AE9	B	406	416	Right-handed alpha
Helix 46	AF1	B	418	424	Right-handed alpha
Helix 47	AF2	B	424	436	Right-handed alpha
Helix 48	AF3	B	455	457	Right-handed 310
Helix 49	AF4	B	458	468	Right-handed alpha
Helix 50	AF5	B	469	473	Right-handed 310
Helix 51	AF6	B	478	493	Right-handed alpha
Helix 52	AF7	B	496	514	Right-handed alpha
Helix 53	AF8	B	515	525	Right-handed alpha
Helix 54	AF9	C	33	35	Right-handed 310
Helix 55	AG1	C	41	43	Right-handed 310
Helix 56	AG2	C	44	52	Right-handed alpha
Helix 57	AG3	C	61	76	Right-handed alpha
Helix 58	AG4	C	84	92	Right-handed alpha
Helix 59	AG5	C	104	110	Right-handed alpha
Helix 60	AG6	C	112	129	Right-handed alpha
Helix 61	AG7	C	164	180	Right-handed alpha
Helix 62	AG8	C	181	188	Right-handed alpha
Helix 63	AG9	C	189	195	Right-handed 310
Helix 64	AH1	C	196	211	Right-handed alpha
Helix 65	AH2	C	223	228	Right-handed alpha
Helix 66	AH3	C	229	242	Right-handed alpha
Helix 67	AH4	C	246	260	Right-handed alpha
Helix 68	AH5	C	286	306	Right-handed alpha
Helix 69	AH6	C	328	346	Right-handed alpha
Helix 70	AH7	C	359	363	Right-handed 310
Helix 71	AH8	C	388	401	Right-handed alpha
Helix 72	AH9	C	406	415	Right-handed alpha
Helix 73	AI1	C	418	424	Right-handed alpha
Helix 74	AI2	C	424	436	Right-handed alpha
Helix 75	AI3	C	455	457	Right-handed 310
Helix 76	AI4	C	458	468	Right-handed alpha
Helix 77	AI5	C	469	473	Right-handed 310
Helix 78	AI6	C	478	493	Right-handed alpha
Helix 79	AI7	C	496	513	Right-handed alpha
Helix 80	AI8	C	515	526	Right-handed alpha
Helix 81	AI9	C	527	530	Right-handed 310
Helix 82	AJ1	D	33	35	Right-handed 310
Helix 83	AJ2	D	41	43	Right-handed 310
Helix 84	AJ3	D	44	53	Right-handed alpha
Helix 85	AJ4	D	61	76	Right-handed alpha
Helix 86	AJ5	D	84	91	Right-handed alpha
Helix 87	AJ6	D	104	110	Right-handed alpha
Helix 88	AJ7	D	112	129	Right-handed alpha
Helix 89	AJ8	D	164	188	Right-handed alpha
Helix 90	AJ9	D	189	195	Right-handed 310
Helix 91	AK1	D	196	211	Right-handed alpha
Helix 92	AK2	D	223	228	Right-handed alpha
Helix 93	AK3	D	229	242	Right-handed alpha
Helix 94	AK4	D	246	260	Right-handed alpha
Helix 95	AK5	D	286	306	Right-handed alpha
Helix 96	AK6	D	328	346	Right-handed alpha
Helix 97	AK7	D	359	363	Right-handed 310
Helix 98	AK8	D	388	401	Right-handed alpha
Helix 99	AK9	D	406	416	Right-handed alpha
Helix 100	AL1	D	418	424	Right-handed alpha
Helix 101	AL2	D	424	436	Right-handed alpha
Helix 102	AL3	D	455	457	Right-handed 310
Helix 103	AL4	D	458	468	Right-handed alpha
Helix 104	AL5	D	469	473	Right-handed 310
Helix 105	AL6	D	478	493	Right-handed alpha
Helix 106	AL7	D	496	515	Right-handed alpha
Helix 107	AL8	D	515	525	Right-handed alpha
Helix 108	AL9	D	526	530	Right-handed 310

There are 20 sheets in PDB entry 4TY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	273	277	anti-parallel
Strand 3	A	264	267	anti-parallel
Strand 4	A	136	140	parallel
Strand 5	A	159	162	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	144	146	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	220	first strand
Strand 2	A	319	325	anti-parallel
Strand 3	A	309	316	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	374	first strand
Strand 2	A	380	385	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	447	first strand
Strand 2	A	450	454	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	264	267	anti-parallel
Strand 4	B	136	140	parallel
Strand 5	B	159	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	144	146	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	219	first strand
Strand 2	B	319	325	anti-parallel
Strand 3	B	309	316	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	374	first strand
Strand 2	B	380	385	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	447	first strand
Strand 2	B	450	454	anti-parallel
Strand 3	B	561	562	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	273	277	anti-parallel
Strand 3	C	264	267	anti-parallel
Strand 4	C	136	140	parallel
Strand 5	C	159	163	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	144	146	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	220	first strand
Strand 2	C	319	325	anti-parallel
Strand 3	C	309	316	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	374	first strand
Strand 2	C	380	385	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	447	first strand
Strand 2	C	450	454	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	273	277	anti-parallel
Strand 3	D	264	267	anti-parallel
Strand 4	D	136	140	parallel
Strand 5	D	159	163	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	144	146	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	219	first strand
Strand 2	D	319	325	anti-parallel
Strand 3	D	309	316	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	374	first strand
Strand 2	D	380	385	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	447	first strand
Strand 2	D	450	454	anti-parallel
Strand 3	D	561	562	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4TY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4TY8