Analysis of interatomic Contacts of Structural Units in PDB entry:
4TYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TYH entry

There are 2 chains in PDB entry 4TYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51HIS 400
B
 PRO 6LEU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4TYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 61Right-handed 310
Helix 2
AA2
A
98 112Right-handed alpha
Helix 3
AA3
A
145 152Right-handed alpha
Helix 4
AA4
A
160 180Right-handed alpha
Helix 5
AA5
A
188 190Right-handed 310
Helix 6
AA6
A
236 239Right-handed 310
Helix 7
AA7
A
240 259Right-handed alpha
Helix 8
AA8
A
295 307Right-handed alpha
Helix 9
AA9
A
315 322Right-handed alpha
Helix 10
AB1
A
322 327Right-handed alpha
Helix 11
AB2
A
328 331Right-handed 310
Helix 12
AB3
A
337 344Right-handed alpha
Helix 13
AB4
A
345 364Right-handed alpha
Helix 14
AB5
A
374 378Right-handed 310
Helix 15
AB6
A
380 400Right-handed alpha
Helix 16
AB7
B
61 78Right-handed alpha
Helix 17
AB8
B
113 120Right-handed alpha
Helix 18
AB9
B
123 144Right-handed alpha
Helix 19
AC1
B
152 154Right-handed 310
Helix 20
AC2
B
190 194Right-handed 310
Helix 21
AC3
B
203 219Right-handed alpha
Helix 22
AC4
B
227 240Right-handed alpha
Helix 23
AC5
B
243 248Right-handed alpha
Helix 24
AC6
B
252 262Right-handed alpha
Helix 25
AC7
B
269 274Right-handed alpha
Helix 26
AC8
B
278 289Right-handed alpha
Helix 27
AC9
B
292 296Right-handed 310
Helix 28
AD1
B
298 305Right-handed alpha
Helix 29
AD2
B
306 309Right-handed 310
Helix 30
AD3
B
313 317Right-handed 310
Helix 31
AD4
B
333 347Right-handed alpha
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There are 7 sheets in PDB entry 4TYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 72first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
131 138anti-parallel
Strand 5
A
120 128anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
212 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
203 205anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
B
182 183anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
16 21anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 30first strand
Strand 2
B
37 43anti-parallel
Strand 3
B
49 54anti-parallel
Strand 4
B
103 107anti-parallel
Strand 5
B
88 90anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
156 158anti-parallel
Strand 3
B
164 166anti-parallel
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