Analysis of interatomic Contacts of Structural Units in PDB entry:
4TYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4TYP entry

There are 4 chains in PDB entry 4TYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1LEU 212
B
 MET 1LEU 212
A
 MET 1GLN 213
D
 MET 1GLY 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4TYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
12 25Right-handed alpha
Helix 2
AA2
C
31 41Right-handed alpha
Helix 3
AA3
C
43 56Right-handed alpha
Helix 4
AA4
C
60 72Right-handed alpha
Helix 5
AA5
C
89 104Right-handed alpha
Helix 6
AA6
C
116 126Right-handed alpha
Helix 7
AA7
C
160 163Right-handed 310
Helix 8
AA8
C
164 189Right-handed alpha
Helix 9
AA9
C
200 212Right-handed alpha
Helix 10
AB1
B
12 25Right-handed alpha
Helix 11
AB2
B
31 42Right-handed alpha
Helix 12
AB3
B
43 56Right-handed alpha
Helix 13
AB4
B
60 72Right-handed alpha
Helix 14
AB5
B
89 104Right-handed alpha
Helix 15
AB6
B
116 126Right-handed alpha
Helix 16
AB7
B
160 163Right-handed 310
Helix 17
AB8
B
164 190Right-handed alpha
Helix 18
AB9
B
200 212Right-handed alpha
Helix 19
AC1
A
12 25Right-handed alpha
Helix 20
AC2
A
31 42Right-handed alpha
Helix 21
AC3
A
43 56Right-handed alpha
Helix 22
AC4
A
60 72Right-handed alpha
Helix 23
AC5
A
89 104Right-handed alpha
Helix 24
AC6
A
116 126Right-handed alpha
Helix 25
AC7
A
160 163Right-handed 310
Helix 26
AC8
A
164 189Right-handed alpha
Helix 27
AC9
A
200 213Right-handed alpha
Helix 28
AD1
D
12 24Right-handed alpha
Helix 29
AD2
D
31 41Right-handed alpha
Helix 30
AD3
D
50 56Right-handed alpha
Helix 31
AD4
D
60 72Right-handed alpha
Helix 32
AD5
D
89 104Right-handed alpha
Helix 33
AD6
D
116 126Right-handed alpha
Helix 34
AD7
D
160 163Right-handed 310
Helix 35
AD8
D
164 189Right-handed alpha
Helix 36
AD9
D
200 214Right-handed alpha
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There are 8 sheets in PDB entry 4TYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
81 84parallel
Strand 3
C
2 6parallel
Strand 4
C
109 114parallel
Strand 5
C
192 196parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 128first strand
Strand 2
C
137 138anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
81 84parallel
Strand 3
B
2 7parallel
Strand 4
B
109 114parallel
Strand 5
B
192 196parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
127 130anti-parallel
Strand 3
B
157 158anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
81 84parallel
Strand 3
A
2 6parallel
Strand 4
A
109 114parallel
Strand 5
A
192 196parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
128 130anti-parallel
Strand 3
A
157 158anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 30first strand
Strand 2
D
81 84parallel
Strand 3
D
2 6parallel
Strand 4
D
109 114parallel
Strand 5
D
192 196parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 128first strand
Strand 2
D
137 138anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il