Analysis of interatomic Contacts of Structural Units in PDB entry:
4U08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U08 entry

There are 2 chains in PDB entry 4U08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 35PHE 425
B
 GLN 35PHE 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 4U08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 47Right-handed alpha
Helix 2
AA2
A
65 71Right-handed 310
Helix 3
AA3
A
88 94Right-handed 310
Helix 4
AA4
A
111 117Right-handed 310
Helix 5
AA5
A
134 140Right-handed 310
Helix 6
AA6
A
157 163Right-handed 310
Helix 7
AA7
A
180 186Right-handed 310
Helix 8
AA8
A
203 209Right-handed 310
Helix 9
AA9
A
226 232Right-handed 310
Helix 10
AB1
A
249 255Right-handed 310
Helix 11
AB2
A
272 278Right-handed 310
Helix 12
AB3
A
295 301Right-handed 310
Helix 13
AB4
A
318 324Right-handed 310
Helix 14
AB5
A
341 347Right-handed 310
Helix 15
AB6
A
364 370Right-handed 310
Helix 16
AB7
A
387 393Right-handed 310
Helix 17
AB8
A
407 418Right-handed alpha
Helix 18
AB9
B
40 47Right-handed alpha
Helix 19
AC1
B
48 51Right-handed 310
Helix 20
AC2
B
65 71Right-handed 310
Helix 21
AC3
B
88 94Right-handed 310
Helix 22
AC4
B
111 117Right-handed 310
Helix 23
AC5
B
134 140Right-handed 310
Helix 24
AC6
B
157 163Right-handed 310
Helix 25
AC7
B
180 186Right-handed 310
Helix 26
AC8
B
203 209Right-handed 310
Helix 27
AC9
B
226 232Right-handed 310
Helix 28
AD1
B
249 255Right-handed 310
Helix 29
AD2
B
272 278Right-handed 310
Helix 30
AD3
B
295 301Right-handed 310
Helix 31
AD4
B
318 324Right-handed 310
Helix 32
AD5
B
341 347Right-handed 310
Helix 33
AD6
B
364 370Right-handed 310
Helix 34
AD7
B
387 393Right-handed 310
Helix 35
AD8
B
407 418Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4U08. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
53 55parallel
Strand 3
A
76 78parallel
Strand 4
A
99 101parallel
Strand 5
A
122 124parallel
Strand 6
A
145 147parallel
Strand 7
A
168 170parallel
Strand 8
A
191 193parallel
Strand 9
A
214 216parallel
Strand 10
A
237 239parallel
Strand 11
A
260 262parallel
Strand 12
A
283 285parallel
Strand 13
A
306 308parallel
Strand 14
A
329 331parallel
Strand 15
A
352 354parallel
Strand 16
A
375 377parallel
Strand 17
A
398 400parallel
Strand 18
A
422 424parallel
Back to list of sheets
Back to top of page

There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
53 55parallel
Strand 3
B
76 78parallel
Strand 4
B
99 101parallel
Strand 5
B
122 124parallel
Strand 6
B
145 147parallel
Strand 7
B
168 170parallel
Strand 8
B
191 193parallel
Strand 9
B
214 216parallel
Strand 10
B
237 239parallel
Strand 11
B
260 262parallel
Strand 12
B
283 285parallel
Strand 13
B
306 308parallel
Strand 14
B
329 331parallel
Strand 15
B
352 354parallel
Strand 16
B
375 377parallel
Strand 17
B
398 400parallel
Strand 18
B
422 424parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il