Analysis of interatomic Contacts of Structural Units in PDB entry:
4U0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U0I entry

There is 1 chain in PDB entry 4U0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 565ASN 933
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4U0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
572 576Right-handed 310
Helix 2
AA2
A
579 583Right-handed 310
Helix 3
AA3
A
585 587Right-handed 310
Helix 4
AA4
A
630 648Right-handed alpha
Helix 5
AA5
A
677 686Right-handed alpha
Helix 6
AA6
A
687 689Right-handed 310
Helix 7
AA7
A
765 786Right-handed alpha
Helix 8
AA8
A
794 796Right-handed 310
Helix 9
AA9
A
811 815Right-handed 310
Helix 10
AB1
A
832 836Right-handed 310
Helix 11
AB2
A
837 844Right-handed alpha
Helix 12
AB3
A
847 864Right-handed alpha
Helix 13
AB4
A
876 886Right-handed alpha
Helix 14
AB5
A
896 907Right-handed alpha
Helix 15
AB6
A
910 914Right-handed 310
Helix 16
AB7
A
916 931Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4U0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 597first strand
Strand 2
A
601 609anti-parallel
Strand 3
A
617 625anti-parallel
Strand 4
A
667 671anti-parallel
Strand 5
A
656 660anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 801first strand
Strand 2
A
805 808anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 825first strand
Strand 2
A
830 831anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il