Analysis of interatomic Contacts of Structural Units in PDB entry:
4U0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4U0O entry

There is 1 chain in PDB entry 4U0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
PRO 8GLU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4U0O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
22 32Right-handed alpha
Helix 2
AA2
B
48 51Right-handed 310
Helix 3
AA3
B
84 97Right-handed alpha
Helix 4
AA4
B
115 130Right-handed alpha
Helix 5
AA5
B
150 160Right-handed alpha
Helix 6
AA6
B
173 175Right-handed 310
Helix 7
AA7
B
176 181Right-handed alpha
Helix 8
AA8
B
185 200Right-handed alpha
Helix 9
AA9
B
216 230Right-handed alpha
Helix 10
AB1
B
255 270Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 4U0O.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 58first strand
Strand 2
B
100 105parallel
Strand 3
B
134 138parallel
Strand 4
B
165 167parallel
Strand 5
B
205 211parallel
Strand 6
B
234 239parallel
Strand 7
B
272 276parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il