Analysis of interatomic Contacts of Structural Units in PDB entry:
4U2Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4U2Q entry

There are 2 chains in PDB entry 4U2Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	ALA 815
B	SER 9	PHE 658

There are103 helices in PDB entry 4U2Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	34	Right-handed alpha
Helix 2	AA2	A	52	67	Right-handed alpha
Helix 3	AA3	A	79	91	Right-handed alpha
Helix 4	AA4	A	115	126	Right-handed alpha
Helix 5	AA5	A	141	154	Right-handed alpha
Helix 6	AA6	A	195	210	Right-handed alpha
Helix 7	AA7	A	250	261	Right-handed alpha
Helix 8	AA8	A	277	300	Right-handed alpha
Helix 9	AA9	A	322	333	Right-handed alpha
Helix 10	AB1	A	416	419	Right-handed 310
Helix 11	AB2	A	423	437	Right-handed alpha
Helix 12	AB3	A	461	469	Right-handed alpha
Helix 13	AB4	A	482	487	Right-handed alpha
Helix 14	AB5	A	513	519	Right-handed alpha
Helix 15	AB6	A	524	544	Right-handed alpha
Helix 16	AB7	A	595	628	Right-handed alpha
Helix 17	AB8	A	635	640	Right-handed alpha
Helix 18	AB9	A	653	661	Right-handed alpha
Helix 19	AC1	A	664	676	Right-handed alpha
Helix 20	AC2	A	685	696	Right-handed alpha
Helix 21	AC3	A	706	713	Right-handed alpha
Helix 22	AC4	A	742	756	Right-handed alpha
Helix 23	AC5	A	757	767	Right-handed alpha
Helix 24	AC6	A	789	815	Right-handed alpha
Helix 25	AC7	B	20	34	Right-handed alpha
Helix 26	AC8	B	52	67	Right-handed alpha
Helix 27	AC9	B	79	91	Right-handed alpha
Helix 28	AD1	B	115	126	Right-handed alpha
Helix 29	AD2	B	141	154	Right-handed alpha
Helix 30	AD3	B	170	185	Right-handed alpha
Helix 31	AD4	B	195	210	Right-handed alpha
Helix 32	AD5	B	250	261	Right-handed alpha
Helix 33	AD6	B	277	300	Right-handed alpha
Helix 34	AD7	B	322	333	Right-handed alpha
Helix 35	AD8	B	411	415	Right-handed 310
Helix 36	AD9	B	416	419	Right-handed 310
Helix 37	AE1	B	423	437	Right-handed alpha
Helix 38	AE2	B	462	469	Right-handed alpha
Helix 39	AE3	B	482	487	Right-handed alpha
Helix 40	AE4	B	512	517	Right-handed alpha
Helix 41	AE5	B	522	537	Right-handed alpha
Helix 42	AE6	B	538	544	Right-handed alpha
Helix 43	AE7	B	595	627	Right-handed alpha
Helix 44	AE8	B	636	641	Right-handed alpha
Helix 45	AE9	B	653	661	Right-handed alpha
Helix 46	AF1	B	664	676	Right-handed alpha
Helix 47	AF2	B	685	696	Right-handed alpha
Helix 48	AF3	B	706	713	Right-handed alpha
Helix 49	AF4	B	742	756	Right-handed alpha
Helix 50	AF5	B	757	767	Right-handed alpha
Helix 51	AF6	B	792	815	Right-handed alpha
Helix 52	AF7	C	21	34	Right-handed alpha
Helix 53	AF8	C	52	67	Right-handed alpha
Helix 54	AF9	C	79	91	Right-handed alpha
Helix 55	AG1	C	115	126	Right-handed alpha
Helix 56	AG2	C	141	154	Right-handed alpha
Helix 57	AG3	C	170	182	Right-handed alpha
Helix 58	AG4	C	195	210	Right-handed alpha
Helix 59	AG5	C	250	261	Right-handed alpha
Helix 60	AG6	C	277	300	Right-handed alpha
Helix 61	AG7	C	322	333	Right-handed alpha
Helix 62	AG8	C	411	415	Right-handed 310
Helix 63	AG9	C	416	419	Right-handed 310
Helix 64	AH1	C	423	437	Right-handed alpha
Helix 65	AH2	C	461	469	Right-handed alpha
Helix 66	AH3	C	482	487	Right-handed alpha
Helix 67	AH4	C	514	519	Right-handed alpha
Helix 68	AH5	C	524	544	Right-handed alpha
Helix 69	AH6	C	597	629	Right-handed alpha
Helix 70	AH7	C	635	639	Right-handed 310
Helix 71	AH8	C	653	661	Right-handed alpha
Helix 72	AH9	C	664	676	Right-handed alpha
Helix 73	AI1	C	685	696	Right-handed alpha
Helix 74	AI2	C	706	713	Right-handed alpha
Helix 75	AI3	C	742	756	Right-handed alpha
Helix 76	AI4	C	757	767	Right-handed alpha
Helix 77	AI5	C	789	815	Right-handed alpha
Helix 78	AI6	D	21	34	Right-handed alpha
Helix 79	AI7	D	52	67	Right-handed alpha
Helix 80	AI8	D	79	91	Right-handed alpha
Helix 81	AI9	D	115	126	Right-handed alpha
Helix 82	AJ1	D	137	140	Right-handed 310
Helix 83	AJ2	D	141	154	Right-handed alpha
Helix 84	AJ3	D	167	185	Right-handed alpha
Helix 85	AJ4	D	195	210	Right-handed alpha
Helix 86	AJ5	D	250	261	Right-handed alpha
Helix 87	AJ6	D	277	300	Right-handed alpha
Helix 88	AJ7	D	322	333	Right-handed alpha
Helix 89	AJ8	D	416	419	Right-handed 310
Helix 90	AJ9	D	423	437	Right-handed alpha
Helix 91	AK1	D	461	469	Right-handed alpha
Helix 92	AK2	D	482	487	Right-handed alpha
Helix 93	AK3	D	522	537	Right-handed alpha
Helix 94	AK4	D	538	544	Right-handed alpha
Helix 95	AK5	D	595	626	Right-handed alpha
Helix 96	AK6	D	636	642	Right-handed alpha
Helix 97	AK7	D	653	661	Right-handed alpha
Helix 98	AK8	D	664	676	Right-handed alpha
Helix 99	AK9	D	685	695	Right-handed alpha
Helix 100	AL1	D	706	713	Right-handed alpha
Helix 101	AL2	D	742	756	Right-handed alpha
Helix 102	AL3	D	757	767	Right-handed alpha
Helix 103	AL4	D	791	814	Right-handed alpha

There are 33 sheets in PDB entry 4U2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	48	first strand
Strand 2	A	9	17	parallel
Strand 3	A	70	73	parallel
Strand 4	A	94	96	parallel
Strand 5	A	108	110	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	130	135	parallel
Strand 3	A	189	191	parallel
Strand 4	A	217	220	parallel
Strand 5	A	239	244	parallel
Strand 6	A	355	362	anti-parallel
Strand 7	A	365	373	anti-parallel
Strand 8	A	377	380	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	341	345	anti-parallel
Strand 3	A	351	352	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	735	737	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	48	first strand
Strand 2	B	10	17	parallel
Strand 3	B	70	73	parallel
Strand 4	B	94	96	parallel
Strand 5	B	108	110	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	130	135	parallel
Strand 3	B	189	193	parallel
Strand 4	B	217	220	parallel
Strand 5	B	239	244	parallel
Strand 6	B	355	362	anti-parallel
Strand 7	B	365	373	anti-parallel
Strand 8	B	377	380	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	338	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	351	352	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	48	first strand
Strand 2	C	9	17	parallel
Strand 3	C	71	73	parallel
Strand 4	C	94	96	parallel
Strand 5	C	108	110	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	130	135	parallel
Strand 3	C	189	191	parallel
Strand 4	C	217	219	parallel
Strand 5	C	239	244	parallel
Strand 6	C	355	362	anti-parallel
Strand 7	C	365	373	anti-parallel
Strand 8	C	377	380	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	341	345	anti-parallel
Strand 3	C	351	352	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	48	first strand
Strand 2	D	9	17	parallel
Strand 3	D	70	73	parallel
Strand 4	D	94	96	parallel
Strand 5	D	108	110	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	162	first strand
Strand 2	D	130	135	parallel
Strand 3	D	189	193	parallel
Strand 4	D	217	220	parallel
Strand 5	D	239	244	parallel
Strand 6	D	355	362	anti-parallel
Strand 7	D	365	373	anti-parallel
Strand 8	D	377	380	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	338	first strand
Strand 2	D	341	345	anti-parallel
Strand 3	D	351	352	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	722	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4U2Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
4U2Q